Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.6e-225 785.8 411 100.0
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 2.1e-204 715.7 411 92.5
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 7.5e-199 697.2 429 86.7
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 1.6e-193 679.5 414 87.4
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.0e-191 672.5 432 83.8
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 4.4e-191 671.4 430 84.2
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 4.9e-190 667.9 429 83.9
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.1e-189 666.8 425 84.5
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 6.0e-188 661.0 412 85.7
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.2e-180 636.7 374 89.8
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 1.7e-179 632.9 419 80.9
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 2.1e-177 625.9 411 82.2
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 9.0e-168 594.0 408 79.2
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 7.4e-162 574.3 418 73.9
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.0e-160 568.5 331 89.7
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 4.0e-160 568.5 430 71.2
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.3e-158 563.5 411 73.5
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 2.5e-157 559.3 411 73.0
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 7.9e-156 554.3 403 73.2
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.3e-155 553.5 402 73.9
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.8e-155 553.1 436 70.0
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 2.3e-155 552.7 438 67.6
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 3.9e-155 552.0 402 73.6
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 8.7e-155 550.8 418 71.5
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.5e-154 550.1 418 71.3
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.3e-154 548.5 402 73.4
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 1.6e-153 546.6 406 71.2
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.1e-152 542.0 331 86.4
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 5.3e-152 541.6 330 86.4
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.9e-152 541.2 439 67.0
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 3.4e-151 538.9 393 72.0
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 9.4e-149 530.8 406 70.4
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.2e-148 530.4 406 70.0
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.6e-148 530.0 406 69.5
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.1e-148 529.6 425 68.2
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 2.1e-148 529.6 399 69.4
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.6e-148 528.5 399 69.4
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.0e-147 527.3 408 68.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 2.3e-147 526.2 406 68.2
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 2.3e-147 526.2 396 70.2
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.5e-146 523.5 414 66.9
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 2.0e-146 523.1 399 70.4
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 3.3e-146 522.3 408 68.4
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 7.4e-146 521.2 403 67.7
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 2.4e-144 516.2 442 65.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 3.1e-144 515.8 384 70.1
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 4.1e-144 515.4 436 66.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.2e-143 513.8 405 66.7
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 7.7e-143 511.1 403 69.0
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 7.7e-143 511.1 412 66.7
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.8e-139 500.0 399 67.4
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 1.8e-139 500.0 414 64.5
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 3.0e-139 499.2 406 65.3
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 5.1e-139 498.4 425 66.8
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.1e-138 497.3 434 63.6
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 3.3e-138 495.7 411 67.2
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 6.3e-137 491.5 435 63.4
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.4e-136 490.3 496 56.9
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.0e-136 488.0 412 64.6
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.2e-135 487.3 361 71.7
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.7e-134 483.4 556 52.7
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 2.9e-134 482.6 536 54.3
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 2.5e-133 479.6 409 62.1
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.2e-132 477.2 400 65.5
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.8e-131 473.4 431 62.6
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 2.3e-131 473.0 523 55.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 3.3e-130 469.2 433 62.4
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 5.7e-130 468.4 413 62.5
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.4e-130 468.0 411 61.8
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 6.3e-129 464.9 419 61.6
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.0e-126 455.3 399 63.2
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 8.0e-124 448.0 411 60.3
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.0e-122 443.4 387 61.8
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 7.5e-122 441.4 324 71.9
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 1.3e-118 430.6 406 59.9
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 8.0e-116 421.4 420 58.6
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 7.5e-114 414.8 410 60.5
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 6.3e-113 411.8 454 55.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.8e-112 410.2 359 63.0
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 5.4e-112 408.7 362 61.9
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 1.2e-111 407.5 353 63.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 4.5e-111 405.6 439 53.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 5.9e-111 405.2 399 56.6
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 7.7e-111 404.8 332 66.9
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 5.6e-109 398.7 409 54.0
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.6e-108 397.1 404 55.9
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.4e-106 389.0 437 54.5
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 4.9e-105 385.6 323 62.5
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.1e-104 384.4 330 62.7
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 3.2e-104 382.9 411 54.7
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.1e-104 382.5 326 65.0
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 5.4e-104 382.1 356 61.0
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.6e-103 380.6 430 53.3
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 4.6e-103 379.0 337 62.3
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 4.6e-103 379.0 314 63.7
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 3.3e-101 372.9 413 54.7
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 5.2e-99 365.5 327 63.3
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 3.7e-97 359.4 351 59.3
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.4e-96 357.5 392 53.3
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 3.5e-95 352.8 395 52.2
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 3.5e-95 352.8 353 58.4
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 7.8e-95 351.7 324 60.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.1e-92 343.6 400 49.2
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.1e-91 339.7 387 51.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.1e-88 331.3 427 48.0
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 7.8e-79 298.5 400 50.0
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 2.3e-78 297.0 310 53.2
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.6e-71 274.2 310 54.2
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 5.4e-64 249.2 325 49.5
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 9.3e-64 248.4 216 63.9
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 1.4e-59 234.6 190 62.6
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 9.3e-56 221.9 231 58.0
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.0e-55 219.2 266 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.6e-47 194.5 282 44.0
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.1e-45 188.3 302 39.7
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.2e-34 151.8 291 39.9
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.6e-31 140.2 79 88.6
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-30 138.7 79 87.3
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 1.0e-30 138.7 79 87.3
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.0e-30 138.7 328 34.5
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.1e-29 135.2 72 93.1
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 2.0e-29 134.4 79 84.8
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 4.3e-29 133.3 79 84.8
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 9.7e-29 132.1 79 83.5
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 8.2e-28 129.0 79 84.8
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.8e-27 127.9 79 79.7
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 2.4e-27 127.5 79 79.7
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 4.1e-27 126.7 79 82.3
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 2.6e-26 124.0 79 75.9
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 5.9e-26 122.9 79 77.2
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 5.9e-26 122.9 79 77.2
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.7e-15 86.7 52 84.6
CARHR177930 Cardamine hirsuta HOM05D005526 ORTHO05D006802 5.3e-11 73.2 58 70.7
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.0e-11 72.8 88 54.5
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 4.5e-10 70.1 81 45.7
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 1.1e-08 65.5 90 45.6
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.9e-08 64.7 44 70.5
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.2e-08 63.5 30 100.0


User provided reference genes

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