Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 0.0e+00 1295.4 657 100.0
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1176.4 658 89.7
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 0.0e+00 1161.0 657 89.5
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1159.1 657 89.2
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 0.0e+00 1146.3 657 89.3
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 0.0e+00 1144.0 657 88.1
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 0.0e+00 1141.7 658 88.4
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 0.0e+00 1141.3 641 89.2
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 0.0e+00 1125.9 658 88.0
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 0.0e+00 1111.3 655 86.4
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 7.4e-297 1023.5 656 78.8
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 5.2e-258 894.4 668 70.7
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 1.8e-186 656.8 682 52.1
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 3.8e-184 649.0 678 52.2
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 2.1e-182 643.3 671 51.6
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 3.0e-181 639.4 606 54.6
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 1.5e-180 637.1 680 52.1
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 9.6e-180 634.4 678 51.6
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 1.3e-179 634.0 669 50.7
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 2.8e-179 632.9 613 55.3
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 8.1e-179 631.3 666 51.8
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 3.1e-178 629.4 681 51.8
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 9.0e-178 627.9 681 51.5
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 1.2e-177 627.5 680 50.3
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 2.9e-176 622.9 705 49.1
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.5e-175 618.6 731 47.5
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 1.2e-174 617.5 605 55.0
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 1.3e-173 614.0 677 50.4
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 5.1e-173 612.1 684 51.8
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 3.3e-172 609.4 640 50.3
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 4.3e-172 609.0 694 52.0
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 5.6e-172 608.6 678 49.7
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 2.8e-171 606.3 681 50.7
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 8.2e-171 604.7 632 52.5
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 1.0e-168 597.8 567 55.9
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 1.0e-168 597.8 678 49.6
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.3e-168 597.4 615 52.0
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 1.4e-167 594.0 565 55.8
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 5.5e-167 592.0 780 45.5
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 5.5e-167 592.0 676 48.5
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 7.1e-167 591.7 669 48.6
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.3e-165 587.4 675 49.2
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 3.9e-165 585.9 677 48.3
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 9.7e-164 581.3 681 47.1
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 8.2e-163 578.2 610 49.8
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 4.1e-162 575.9 665 49.2
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 9.0e-162 574.7 657 48.7
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 3.4e-161 572.8 600 50.8
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 7.6e-161 571.6 659 48.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 7.6e-161 571.6 675 49.0
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.2e-160 570.1 665 47.5
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 2.9e-160 569.7 675 48.3
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 3.8e-160 569.3 606 50.0
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 2.5e-159 566.6 586 51.7
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 9.3e-159 564.7 674 48.4
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 4.6e-158 562.4 614 50.5
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 6.1e-158 562.0 602 49.5
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 7.9e-158 561.6 608 50.5
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 8.7e-157 558.1 659 46.3
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.9e-156 557.0 616 48.5
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 3.3e-156 556.2 680 46.9
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 3.3e-156 556.2 673 47.1
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 3.7e-155 552.7 628 47.6
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 3.7e-155 552.7 648 47.4
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 1.8e-154 550.4 615 48.5
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 6.9e-154 548.5 663 45.7
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 7.7e-153 545.0 674 46.7
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.0e-152 544.7 673 45.5
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 1.7e-152 543.9 661 45.8
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 4.2e-151 539.3 618 48.7
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.6e-150 537.3 603 48.9
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 6.1e-150 535.4 571 49.7
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 1.8e-149 533.9 581 49.6
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 2.3e-149 533.5 615 46.3
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 7.4e-148 528.5 569 49.4
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 6.3e-147 525.4 666 44.7
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 5.3e-146 522.3 606 47.7
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 1.2e-145 521.2 660 43.9
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 2.6e-145 520.0 615 46.3
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 4.5e-145 519.2 610 47.4
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 6.1e-142 508.8 607 47.4
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.9e-129 465.7 479 52.2
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.8e-125 454.1 598 41.3
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 1.2e-124 451.4 612 40.2
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 9.8e-124 448.4 620 43.5
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 1.6e-105 387.9 388 53.1
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 1.5e-103 381.3 358 54.7
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 2.9e-99 367.1 435 46.2
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 4.9e-91 339.7 519 35.3
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 5.8e-84 316.2 588 33.0
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 9.0e-77 292.4 685 28.6
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 2.3e-72 277.7 277 49.8
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.3e-70 271.9 342 45.6
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 2.1e-70 271.2 352 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 5.3e-69 266.5 543 33.1
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 4.9e-67 260.0 536 30.4
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 4.9e-59 233.4 207 50.7
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 2.2e-43 181.4 176 50.0
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 5.1e-40 170.2 133 62.4
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 5.7e-39 166.8 133 61.7
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 1.6e-33 148.7 114 56.1
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.3e-30 139.0 121 59.5
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 2.0e-23 115.2 227 32.6
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 2.9e-19 101.3 437 22.0
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 5.5e-18 97.1 83 48.2
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 2.7e-17 94.7 200 32.5
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.1e-13 82.8 159 31.4
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 6.1e-09 67.0 143 28.0
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 4.0e-08 64.3 173 24.3
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 5.2e-08 63.9 119 28.6
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 5.7e-07 60.5 117 28.2
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 9.8e-07 59.7 117 28.2
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 9.8e-07 59.7 117 27.4
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 1.3e-06 59.3 117 26.5
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 1.3e-06 59.3 117 26.5
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 1.7e-06 58.9 142 23.9
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 1.7e-06 58.9 143 23.1
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 2.2e-06 58.5 111 28.8
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.2e-06 58.5 223 22.0
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 2.2e-06 58.5 141 27.0
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 2.8e-06 58.2 117 27.4
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 2.8e-06 58.2 117 27.4
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 3.7e-06 57.8 117 27.4
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 4.8e-06 57.4 160 26.2
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 4.8e-06 57.4 117 27.4
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 4.8e-06 57.4 117 27.4
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 4.8e-06 57.4 88 30.7
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 4.8e-06 57.4 114 25.4
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 6.3e-06 57.0 88 31.8
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 6.3e-06 57.0 117 26.5
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 6.3e-06 57.0 117 26.5
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 6.3e-06 57.0 117 26.5
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 8.3e-06 56.6 114 27.2
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 8.3e-06 56.6 117 26.5
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 8.3e-06 56.6 114 26.3
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 8.3e-06 56.6 117 25.6


User provided reference genes

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