Gene: Sopen02g020340

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g020340
  • Transcript Identifier Sopen02g020340.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 44134524-44145252 : positive

Gene Family Information

  • ID HOM05D007300
  • #Genes/#Species 107/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g020340.1

Descriptions

  • Description 16S rRNA processing protein RimM family | FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity | INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: PRC-barrel , UTP--glucose-1-phosphate uridylyltransferase , RimM protein , 16S rRNA processing protein RimM | BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
InterProrRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043022
IEA
InterProribosome binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G46420

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
InterProribosome
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G46420

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011961 16S rRNA processing protein RimM
IPR002676 RimM, N-terminal
IPR009000 Translation protein, beta-barrel domain superfamily
IPR029044 Nucleotide-diphospho-sugar transferases
IPR027275 PRC-barrel domain
IPR039741 UDP-sugar pyrophosphorylase
IPR011033 PRC-barrel-like superfamily
IPR036976 RimM, N-terminal domain superfamily
Mapman id Description
35.1 not assigned.annotated