Gene: AT5G46420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G46420
  • Transcript Identifier AT5G46420.1
  • Gene Type Coding gene
  • Location Chr5 : 18829999-18832893 : positive

Gene Family Information

  • ID HOM05D007300
  • #Genes/#Species 107/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G46420.1
  • uniprot Q9FHG3

Descriptions

  • Description 16S rRNA processing protein RimM family
  • Computational description 16S rRNA processing protein RimM family; FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity; INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel (InterPro:IPR007903), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), RimM protein (InterPro:IPR002676), 16S rRNA processing protein RimM (InterPro:IPR011961); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
Gene OntologyrRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0006048
IBA
Gene OntologyUDP-N-acetylglucosamine biosynthetic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043022
IEA
Gene Ontologyribosome binding
GO:0043022
IEA
InterProribosome binding
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0003977
IBA
Gene OntologyUDP-N-acetylglucosamine diphosphorylase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
Gene Ontologyribosome
GO:0005840
IEA
InterProribosome
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast3
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036976 RimM, N-terminal domain superfamily
IPR029044 Nucleotide-diphospho-sugar transferases
IPR009000 Translation protein, beta-barrel domain superfamily
IPR002676 RimM, N-terminal
IPR039741 UDP-sugar pyrophosphorylase
IPR011033 PRC-barrel-like superfamily
IPR027275 PRC-barrel domain
IPR011961 16S rRNA processing protein RimM
Mapman id Description
35.1 not assigned.annotated