Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 2.0e-217 758.8 381 100.0
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 2.9e-176 622.1 379 85.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.0e-173 613.6 379 82.8
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.0e-173 613.6 380 84.5
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.3e-173 613.2 379 83.9
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.8e-171 605.5 409 77.5
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 4.4e-169 598.2 377 83.0
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.6e-163 579.7 373 79.9
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.6e-163 579.7 373 79.9
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 4.7e-163 578.2 374 80.2
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 2.0e-161 572.8 371 80.1
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 3.5e-158 562.0 378 76.7
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 3.9e-149 531.9 321 83.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 8.7e-149 530.8 321 83.2
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.9e-148 529.6 321 82.9
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 3.5e-142 508.8 361 75.6
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 8.1e-139 497.7 378 67.5
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.8e-138 496.5 375 67.7
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 1.5e-137 493.4 371 68.2
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 6.4e-136 488.0 378 67.5
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 7.1e-135 484.6 383 66.8
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.7e-134 482.6 383 65.8
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.7e-134 482.6 380 65.3
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.3e-133 480.3 371 67.1
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 3.0e-133 479.2 380 66.1
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.9e-133 478.8 381 65.4
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.1e-132 477.2 361 68.4
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.1e-132 477.2 378 64.6
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 4.3e-132 475.3 382 63.9
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.6e-131 473.4 362 67.4
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 1.6e-131 473.4 364 67.6
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.1e-131 473.0 325 73.5
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 8.2e-131 471.1 381 65.6
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.1e-130 470.7 381 63.5
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.1e-130 470.7 383 64.0
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.1e-130 470.7 366 67.5
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-130 470.3 378 66.4
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.2e-129 467.2 381 65.1
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 5.8e-129 464.9 381 64.8
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 7.6e-129 464.5 365 65.8
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 2.9e-128 462.6 382 63.4
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 6.5e-128 461.5 363 66.4
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 8.4e-128 461.1 381 62.2
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.1e-127 460.7 382 64.4
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.4e-127 460.3 358 65.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.4e-127 460.3 326 72.4
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 2.5e-127 459.5 379 62.8
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 3.2e-127 459.1 384 63.5
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 5.5e-127 458.4 360 67.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 9.3e-127 457.6 382 62.6
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.6e-126 456.8 347 67.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.5e-126 455.7 417 60.2
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 3.5e-126 455.7 382 62.3
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 4.6e-126 455.3 326 70.2
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.0e-125 454.1 379 64.6
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.0e-125 454.1 351 66.1
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.3e-125 453.0 379 61.7
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 8.7e-125 451.1 424 59.4
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.1e-124 450.7 411 59.4
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.2e-123 446.4 370 64.9
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 3.7e-123 445.7 381 62.5
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 6.3e-123 444.9 350 64.6
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 6.3e-123 444.9 360 64.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 8.2e-123 444.5 388 61.9
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.1e-122 444.1 331 67.1
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 4.1e-122 442.2 378 61.9
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.2e-121 440.7 329 69.0
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.2e-121 440.7 379 60.9
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.5e-121 440.3 374 62.3
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 2.0e-121 439.9 395 60.0
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 6.5e-120 434.9 385 61.8
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 8.5e-120 434.5 386 59.8
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.1e-119 434.1 378 61.4
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.1e-119 434.1 363 62.5
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 2.5e-119 433.0 387 61.8
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.2e-119 432.2 481 51.4
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 4.2e-119 432.2 324 66.0
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 4.2e-119 432.2 360 64.7
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 5.5e-119 431.8 349 65.0
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.2e-118 430.6 324 66.0
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 2.1e-118 429.9 326 66.3
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 6.1e-118 428.3 378 62.4
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 5.1e-117 425.2 381 61.7
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 1.5e-116 423.7 319 66.1
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.0e-116 423.3 323 66.6
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.5e-116 422.9 356 62.6
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 3.3e-116 422.5 319 66.1
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 9.7e-116 421.0 320 67.5
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 9.7e-116 421.0 427 55.0
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.4e-114 417.2 334 63.8
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.1e-111 407.5 363 60.1
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.1e-111 407.5 363 60.1
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.4e-109 400.6 319 65.5
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.0e-104 382.1 320 63.4
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 1.1e-100 370.9 321 58.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 5.0e-96 355.5 298 61.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 3.4e-92 342.8 225 76.9
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 2.2e-91 340.1 365 51.8
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 3.8e-88 329.3 266 62.8
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 7.2e-87 325.1 317 52.7
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.4e-85 320.9 275 61.8
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 5.2e-85 318.9 265 61.1
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.8e-83 313.2 378 50.3
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 9.8e-76 288.1 453 40.8
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.7e-73 280.0 193 67.4
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 6.8e-61 238.8 138 81.2
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.4e-60 236.5 197 60.9
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 4.0e-53 213.0 168 68.5
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 5.2e-53 212.6 430 35.6
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 7.3e-47 192.2 223 51.1
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.4e-42 177.2 139 66.2
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 4.4e-36 156.4 136 57.4
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.1e-31 141.7 79 83.5
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 9.0e-21 105.5 332 27.1
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.1e-18 98.6 323 27.2
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 5.5e-18 96.3 328 25.0
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 2.7e-17 94.0 340 26.2
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 8.7e-16 89.0 346 27.5
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 8.7e-16 89.0 326 27.0
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.9e-15 87.8 200 29.5
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 3.3e-15 87.0 325 26.5
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 2.1e-14 84.3 200 31.0
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 4.8e-14 83.2 176 31.8
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 4.8e-14 83.2 336 25.9
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 6.2e-14 82.8 324 26.2
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 6.2e-14 82.8 327 26.3
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 6.2e-14 82.8 199 32.2
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 8.2e-14 82.4 202 28.7
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 1.1e-13 82.0 199 32.2
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.1e-13 82.0 346 24.9
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 2.4e-13 80.9 213 28.2
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 3.1e-13 80.5 200 29.0
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 3.1e-13 80.5 53 73.6
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 5.3e-13 79.7 197 31.0
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 6.9e-13 79.3 202 28.2
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 6.9e-13 79.3 204 28.9
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 9.0e-13 79.0 199 30.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.2e-12 78.6 324 25.6
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 1.5e-12 78.2 327 24.5
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 2.0e-12 77.8 212 30.7
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.0e-12 77.8 200 29.5
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 2.0e-12 77.8 218 28.9
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 2.6e-12 77.4 323 23.8
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 2.6e-12 77.4 323 23.8
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.6e-12 77.4 360 25.0
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 4.5e-12 76.6 210 27.6
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 5.8e-12 76.3 203 27.1
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 7.6e-12 75.9 203 27.1
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 7.6e-12 75.9 198 29.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.0e-11 75.5 204 30.4
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.3e-11 75.1 177 29.9
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 1.3e-11 75.1 325 24.6
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 1.7e-11 74.7 203 26.6
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 5.0e-11 73.2 177 29.9
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 5.0e-11 73.2 203 29.1
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 8.4e-11 72.4 174 29.9
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 1.1e-10 72.0 177 28.2
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 1.9e-10 71.2 218 23.9
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 3.5e-09 67.0 308 25.3
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 3.9e-08 63.5 397 22.7
Cre02.g086050 Chlamydomonas reinhardtii HOM05D005655 ORTHO05D007386 5.1e-08 63.2 369 23.8
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.5e-07 61.6 182 27.5
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 2.5e-07 60.8 193 24.9
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 5.7e-07 59.7 74 39.2
PRCOL_00002295 Prasinoderma coloniale HOM05D006708 ORTHO05D008321 9.7e-07 58.9 152 30.3


User provided reference genes

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