Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.7e-100 369.4 189 100.0
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 9.7e-93 343.6 188 92.0
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 2.8e-92 342.0 188 91.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 4.8e-92 341.3 188 91.5
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 8.2e-92 340.5 188 91.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 2.4e-91 339.0 188 90.4
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 2.4e-91 339.0 188 90.4
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 2.4e-91 339.0 188 90.4
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 7.0e-91 337.4 188 90.4
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 7.0e-91 337.4 188 90.4
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 5.9e-90 334.3 188 88.8
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 7.7e-90 334.0 188 90.4
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 6.5e-89 330.9 182 91.2
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 2.6e-85 318.9 188 83.5
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 7.5e-85 317.4 188 82.4
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.3e-84 316.6 188 82.4
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.7e-84 315.1 188 81.9
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 3.7e-84 315.1 188 83.0
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.1e-83 311.6 188 81.4
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.1e-83 311.6 188 81.4
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.4e-70 270.0 181 74.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.2e-69 266.9 188 70.7
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.5e-69 266.5 134 100.0
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.4e-61 238.4 188 62.2
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 7.5e-61 237.7 188 62.2
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 9.8e-61 237.3 188 61.7
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 1.3e-60 236.9 164 76.2
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 4.9e-60 235.0 188 60.6
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.9e-59 233.0 169 72.2
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.0e-59 231.1 188 61.2
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 2.7e-58 229.2 188 60.1
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 2.7e-58 229.2 188 58.5
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 2.7e-58 229.2 188 59.6
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 3.5e-58 228.8 186 60.8
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 4.6e-58 228.4 188 60.1
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 4.6e-58 228.4 188 59.6
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 7.8e-58 227.6 187 59.4
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.7e-57 226.5 188 60.6
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 3.0e-57 225.7 193 59.1
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 3.9e-57 225.3 188 56.9
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 3.9e-57 225.3 188 61.7
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 5.1e-57 224.9 193 58.5
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.1e-57 224.9 193 58.5
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.1e-57 224.9 188 58.5
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 6.6e-57 224.6 188 58.5
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 6.6e-57 224.6 188 59.6
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.1e-56 223.8 188 59.0
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 1.5e-56 223.4 186 58.1
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.3e-56 222.2 188 58.5
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 3.3e-56 222.2 188 58.5
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.6e-56 221.5 188 58.5
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 5.6e-56 221.5 188 59.0
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 7.3e-56 221.1 188 54.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 7.3e-56 221.1 188 59.6
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 9.5e-56 220.7 186 56.5
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 9.5e-56 220.7 188 57.4
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.6e-55 219.9 188 58.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.6e-55 219.9 188 57.4
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.1e-55 219.5 126 88.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.1e-55 219.5 193 57.5
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.7e-55 218.4 125 86.4
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 6.2e-55 218.0 188 57.4
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 6.2e-55 218.0 188 56.4
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 8.1e-55 217.6 188 56.4
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.1e-54 217.2 188 56.9
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.4e-54 216.9 186 57.0
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.8e-54 216.5 188 56.4
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.8e-54 216.5 188 56.4
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.1e-54 215.7 188 57.4
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 4.0e-54 215.3 188 55.9
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 4.0e-54 215.3 188 58.5
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.2e-54 214.9 189 57.7
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 6.8e-54 214.5 195 57.4
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 6.8e-54 214.5 193 56.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 6.8e-54 214.5 188 55.3
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 8.9e-54 214.2 188 55.9
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 8.9e-54 214.2 188 57.4
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.2e-53 213.8 186 53.8
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.2e-53 213.8 188 55.3
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.2e-53 213.8 188 55.9
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 1.5e-53 213.4 188 55.9
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 1.5e-53 213.4 188 55.9
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.5e-53 213.4 192 55.2
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.5e-53 213.4 188 57.4
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 2.0e-53 213.0 188 56.9
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.6e-53 212.6 188 55.3
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.6e-53 212.6 188 55.9
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 3.4e-53 212.2 188 55.9
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 5.8e-53 211.5 188 55.3
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 9.9e-53 210.7 190 55.3
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 9.9e-53 210.7 189 57.1
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 9.9e-53 210.7 188 56.9
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.3e-52 210.3 188 54.3
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.2e-52 209.5 193 55.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 2.2e-52 209.5 188 54.8
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.9e-52 209.1 188 55.9
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 3.7e-52 208.8 182 56.0
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 4.9e-52 208.4 188 52.7
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.9e-52 208.4 193 54.9
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 4.9e-52 208.4 186 53.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-52 208.4 188 55.3
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-52 208.4 188 55.3
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 8.3e-52 207.6 188 54.8
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.3e-52 207.6 193 54.4
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.1e-51 207.2 187 55.1
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.4e-51 206.1 188 54.3
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 3.2e-51 205.7 188 54.3
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 4.1e-51 205.3 181 55.2
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.4e-51 204.9 189 52.9
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 7.1e-51 204.5 188 60.6
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.6e-50 203.4 187 53.5
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 3.5e-50 202.2 161 68.3
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.9e-49 198.7 188 51.1
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 6.6e-49 198.0 188 52.7
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.1e-48 197.2 188 52.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.9e-48 196.4 187 51.3
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 2.5e-48 196.1 188 51.6
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 5.6e-48 194.9 186 51.1
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 1.2e-47 193.7 188 52.7
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 4.7e-47 191.8 188 51.1
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 4.7e-47 191.8 189 51.3
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 6.2e-47 191.4 189 51.3
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.4e-45 185.7 162 57.4
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 9.9e-45 184.1 188 50.0
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 6.0e-42 174.9 156 56.4
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.3e-41 172.9 191 47.6
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 9.6e-40 167.5 115 68.7
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 1.6e-39 166.8 133 63.9
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 6.4e-36 154.8 142 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.2e-35 152.5 191 42.4
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.3e-33 146.4 145 50.3
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 2.5e-32 142.9 188 41.0
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.3e-32 142.1 180 41.7
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 2.1e-31 139.8 192 39.1
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.6e-29 132.9 170 40.6
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.8e-28 129.0 136 52.9
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.9e-27 126.7 190 35.8
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 4.6e-26 122.1 192 36.5
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.4e-22 109.8 178 35.4
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 4.0e-22 109.0 103 53.4
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-20 103.2 164 36.0
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 5.3e-14 82.0 112 40.2
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.8e-09 67.0 66 51.5


User provided reference genes

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