Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.2e-161 573.2 288 100.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 4.3e-124 448.4 289 76.5
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 4.2e-111 405.2 214 97.2
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 5.3e-98 361.7 318 61.6
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.5e-97 360.1 256 71.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 4.3e-92 342.0 182 94.5
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.7e-72 276.9 189 73.0
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 6.9e-66 255.0 277 49.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.0e-64 251.1 293 45.4
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.3e-60 236.1 261 47.9
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 4.8e-59 232.3 292 46.9
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 8.2e-59 231.5 266 47.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 7.7e-57 224.9 270 43.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.2e-56 223.4 254 46.5
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.2e-54 217.6 294 47.3
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 8.0e-54 214.9 289 41.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.3e-53 213.4 254 42.5
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.8e-48 196.1 245 42.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 8.5e-48 194.9 328 36.3
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.8e-45 187.2 248 36.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 4.0e-45 186.0 298 38.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 4.4e-44 182.6 271 38.7
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.2e-40 170.2 294 35.7
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 8.5e-40 168.3 235 38.7
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 9.5e-39 164.9 262 37.4
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 8.0e-38 161.8 270 34.8
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.3e-37 160.2 324 35.2
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.5e-36 157.5 276 36.2
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.3e-35 154.5 276 35.5
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 4.9e-35 152.5 225 38.7
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.1e-34 151.4 259 37.8
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 7.0e-34 148.7 268 35.4
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.6e-33 147.5 294 33.7
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.0e-33 147.1 264 36.4
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-32 143.7 259 36.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 8.6e-32 141.7 228 36.8
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.3e-31 139.8 317 32.8
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 3.3e-31 139.8 317 32.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 3.3e-31 139.8 250 35.6
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.2e-30 137.9 271 34.7
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.6e-30 136.3 260 35.0
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 6.1e-30 135.6 288 33.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 8.0e-30 135.2 253 36.0
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.4e-29 134.4 297 32.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 2.3e-29 133.7 273 33.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 4.0e-29 132.9 291 33.0
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-28 130.6 310 32.3
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.0e-28 130.6 248 32.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.7e-28 129.0 292 31.8
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 5.7e-28 129.0 254 31.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 2.2e-27 127.1 113 59.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.9e-27 126.7 265 32.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.1e-26 124.8 300 31.7
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 3.2e-26 123.2 120 49.2
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 5.4e-26 122.5 245 32.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 5.4e-26 122.5 245 31.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.6e-25 120.9 244 30.7
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.7e-25 120.2 251 31.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.9e-25 119.0 245 30.6
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 7.8e-25 118.6 243 32.5
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.0e-24 118.2 139 46.8
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-24 116.7 303 31.0
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-24 116.7 292 30.1
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.9e-24 116.3 286 31.5
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 6.6e-24 115.5 243 31.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 6.6e-24 115.5 290 32.1
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.6e-24 115.2 318 30.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 8.6e-24 115.2 245 30.6
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.5e-23 114.4 245 30.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.3e-23 112.8 243 31.7
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 4.3e-23 112.8 317 30.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 5.6e-23 112.5 246 30.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 5.6e-23 112.5 243 31.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 7.3e-23 112.1 245 29.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 9.5e-23 111.7 248 33.5
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 9.5e-23 111.7 243 31.3
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-22 111.3 243 31.3
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.2e-22 111.3 238 31.9
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 3.6e-22 109.8 237 32.1
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 8.0e-22 108.6 237 32.1
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.0e-21 108.2 243 29.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.0e-21 108.2 243 29.6
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 3.1e-21 106.7 326 29.1
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 8.9e-21 105.1 186 38.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-20 104.8 320 28.4
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-19 101.3 124 47.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.2e-19 100.5 249 32.1
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 8.3e-19 98.6 165 35.2
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 8.3e-19 98.6 187 33.7
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.9e-15 87.4 157 33.8
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.2e-14 84.7 98 46.9
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 2.8e-14 83.6 243 30.9
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.4e-13 81.3 247 27.9
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-13 80.5 223 27.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 4.0e-13 79.7 248 30.2
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.2e-12 78.2 251 26.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.6e-12 77.0 149 30.2
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 3.4e-12 76.6 141 32.6
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 5.8e-12 75.9 152 30.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.5e-12 75.5 240 27.9
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 7.5e-12 75.5 146 32.2
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 7.5e-12 75.5 239 27.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 9.8e-12 75.1 145 33.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.7e-11 74.3 198 26.8
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.2e-11 73.9 209 28.7
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.9e-11 73.6 144 33.3
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 2.9e-11 73.6 144 32.6
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 3.7e-11 73.2 251 27.5
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 6.4e-11 72.4 205 28.3
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 6.4e-11 72.4 249 28.1
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.4e-10 71.2 138 30.4
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.9e-10 70.9 144 30.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.9e-10 70.9 139 30.2
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.4e-10 70.5 141 30.5
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 3.2e-10 70.1 139 33.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.1e-10 69.7 134 31.3
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 5.4e-10 69.3 144 30.6
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.1e-10 68.9 142 31.0
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.1e-10 68.9 240 28.8
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.1e-10 68.9 142 30.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.2e-09 68.2 84 40.5
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.6e-09 67.8 151 31.8
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-09 67.4 149 29.5
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.1e-09 67.4 144 29.9
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.7e-09 67.0 84 40.5
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 2.7e-09 67.0 151 31.8
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 2.7e-09 67.0 148 33.8
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.7e-09 67.0 151 31.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 2.7e-09 67.0 148 33.8
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.7e-09 67.0 151 31.8
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 2.7e-09 67.0 144 28.5
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.6e-09 66.2 144 32.6
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 4.6e-09 66.2 148 33.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 7.8e-09 65.5 142 31.7
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 1.0e-08 65.1 136 29.4
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.3e-08 64.7 144 31.9
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.7e-08 64.3 143 27.3
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.7e-08 64.3 251 25.1
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-08 63.9 148 31.8
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-08 63.9 153 30.7
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 3.9e-08 63.2 157 29.9
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.9e-08 63.2 157 29.9
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.9e-08 63.2 157 29.9
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.9e-08 63.2 142 29.6
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.9e-08 63.2 142 28.9
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 5.1e-08 62.8 138 31.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.1e-08 62.8 136 27.9
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 6.6e-08 62.4 164 28.0
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 8.6e-08 62.0 204 24.5
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 8.6e-08 62.0 132 34.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.1e-07 61.6 163 30.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.1e-07 61.6 61 54.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.1e-07 61.6 167 28.1
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.9e-07 60.8 158 32.9
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.3e-07 60.1 140 32.1
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 5.6e-07 59.3 140 30.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 9.5e-07 58.5 51 52.9
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.2e-06 58.2 139 29.5
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.6e-06 57.8 148 29.1
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.6e-06 57.8 161 30.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.6e-06 57.8 142 30.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.1e-06 57.4 143 31.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 2.1e-06 57.4 53 50.9
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.8e-06 57.0 169 28.4
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 8.1e-06 55.5 158 27.2
arahy.Tifrunner.gnm1.ann1.CMRI1Q Arachis hypogaea HOM05D042872 ORTHO05D012325 8.1e-06 55.5 97 38.1


User provided reference genes

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