Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033860 Solanum pennellii HOM05D004511 ORTHO05D005348 4.7e-76 287.7 140 100.0
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 2.2e-41 172.6 104 84.6
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 2.2e-41 172.6 104 84.6
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 6.4e-41 171.0 104 82.7
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 6.4e-41 171.0 104 82.7
Lj6A637T63 Lonicera japonica HOM05D004511 ORTHO05D005348 1.0e-38 163.7 104 77.9
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 1.7e-38 162.9 104 77.9
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 2.3e-38 162.5 120 70.0
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 5.1e-38 161.4 104 76.9
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 1.9e-37 159.5 104 75.0
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 2.5e-37 159.1 104 76.0
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 4.3e-37 158.3 104 76.9
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 4.3e-37 158.3 104 75.0
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 5.6e-37 157.9 104 74.0
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 7.3e-37 157.5 104 76.0
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 7.3e-37 157.5 104 76.9
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 7.3e-37 157.5 104 75.0
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 1.3e-36 156.8 104 76.0
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 1.3e-36 156.8 104 76.0
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 1.6e-36 156.4 104 73.1
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 1.6e-36 156.4 104 75.0
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 1.6e-36 156.4 104 75.0
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 1.6e-36 156.4 104 76.0
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 2.1e-36 156.0 104 76.0
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 2.1e-36 156.0 120 68.3
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 2.1e-36 156.0 104 74.0
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 2.1e-36 156.0 104 74.0
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 2.8e-36 155.6 104 75.0
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 2.8e-36 155.6 104 76.0
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 2.8e-36 155.6 104 76.0
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 3.6e-36 155.2 104 73.1
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 3.6e-36 155.2 103 75.7
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 4.8e-36 154.8 104 74.0
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 4.8e-36 154.8 104 74.0
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 4.8e-36 154.8 104 74.0
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 4.8e-36 154.8 104 72.1
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 4.8e-36 154.8 104 72.1
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 6.2e-36 154.5 104 72.1
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 6.2e-36 154.5 104 76.0
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 6.2e-36 154.5 104 73.1
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 74.0
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 74.0
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 72.1
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 8.1e-36 154.1 104 76.0
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 1.4e-35 153.3 104 74.0
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 1.4e-35 153.3 104 74.0
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 1.8e-35 152.9 104 71.2
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 1.8e-35 152.9 104 75.0
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.8e-35 152.9 104 75.0
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 2.4e-35 152.5 104 74.0
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 2.4e-35 152.5 104 75.0
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 2.4e-35 152.5 104 71.2
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 3.1e-35 152.1 104 72.1
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 3.1e-35 152.1 104 71.2
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 4.0e-35 151.8 104 72.1
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 4.0e-35 151.8 104 70.2
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 5.3e-35 151.4 104 72.1
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 6.9e-35 151.0 104 70.2
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 6.9e-35 151.0 104 71.2
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 1.2e-34 150.2 104 72.1
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 1.5e-34 149.8 104 70.2
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 1.5e-34 149.8 104 73.1
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 2.0e-34 149.4 104 71.2
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 2.6e-34 149.1 104 69.2
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 2.6e-34 149.1 104 71.2
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 4.5e-34 148.3 104 71.2
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 4.5e-34 148.3 103 71.8
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 2.2e-33 146.0 103 69.9
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 1.1e-32 143.7 124 62.9
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 1.4e-32 143.3 104 69.2
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 2.4e-32 142.5 104 69.2
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 2.4e-32 142.5 104 70.2
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 3.2e-32 142.1 103 68.9
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 7.1e-32 141.0 104 66.3
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 4.6e-31 138.3 104 67.3
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 2.3e-30 136.0 104 64.4
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 3.0e-30 135.6 88 77.3
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.5e-29 133.3 92 73.9
Solyc09g090890.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 2.5e-29 132.5 68 92.6
vmacro08562 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 7.4e-29 131.0 91 72.5
CDE08G1197 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 5.3e-27 124.8 88 68.2
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 1.5e-26 123.2 149 47.0
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 2.0e-26 122.9 110 60.9
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 2.6e-26 122.5 103 59.2
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 2.2e-25 119.4 104 63.5
CAN.G524.10 Capsicum annuum HOM05D004511 ORTHO05D005348 4.9e-25 118.2 65 86.2
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 1.9e-24 116.3 105 53.3
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 4.2e-24 115.2 101 59.4
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 1.6e-23 113.2 137 50.4
CSS0015875 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 6.0e-23 111.3 65 81.5
CSS0022858 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 6.0e-23 111.3 65 81.5
SHI00812 Sapria himalayana HOM05D004511 ORTHO05D005348 3.0e-22 109.0 88 62.5
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 7.4e-21 104.4 104 49.0
Hund00489 Selenicereus undatus HOM05D004511 ORTHO05D005348 6.2e-20 101.3 65 73.8
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.5e-18 96.7 69 68.1
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.3e-17 93.6 73 63.0
CBR_g22304 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-14 82.8 87 47.1
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 2.4e-11 72.8 107 39.3
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.9e-10 68.2 68 52.9
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 5.9e-10 68.2 48 70.8
Manes.03G157900 Manihot esculenta HOM05D004511 ORTHO05D005348 2.2e-09 66.2 42 76.2
Ca_21499_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.8e-09 65.5 94 39.4
Hund00476 Selenicereus undatus HOM05D004511 ORTHO05D005348 6.5e-09 64.7 42 73.8
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 8.5e-09 64.3 40 75.0
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 7.9e-07 57.8 107 32.7
Atru.chr4.2015 Acer truncatum HOM05D004511 ORTHO05D005348 1.8e-06 56.6 32 81.2


User provided reference genes

Program Settings