Gene: Sopen09g033830

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g033830
  • Transcript Identifier Sopen09g033830.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 81869862-81902919 : negative

Gene Family Information

  • ID HOM05D004511
  • #Genes/#Species 160/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g033830.1

Descriptions

  • Description Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. | MUTL protein homolog 1 (MSH1) | FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, catalytic activity, ATP binding, nuclease activity | INVOLVED IN: mismatch repair, mitochondrial genome maintenance, mitochondrial DNA metabolic process | LOCATED IN: mitochondrion, chloroplast | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like , DNA mismatch repair protein MutS, N-terminal , Excinuclease ABC, C subunit, N-terminal , DNA mismatch repair protein MutS, C-terminal , DNA mismatch repair protein MutS-like, N-terminal | BEST Arabidopsis thaliana protein match is: MUTS homolog 6
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
IEA
InterPromismatch repair
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G24320
GO:0032042
ISO
PLAZA Integrative Orthologymitochondrial DNA metabolic process AT3G24320
GO:0000002
ISO
PLAZA Integrative Orthologymitochondrial genome maintenance AT3G24320

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT3G24320

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G24320
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G24320
GO:0042651
ISO
PLAZA Integrative Orthologythylakoid membrane AT3G24320
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT3G24320

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR035901 GIY-YIG endonuclease superfamily
IPR016151 DNA mismatch repair protein MutS, N-terminal
IPR045076 DNA mismatch repair MutS family
Mapman id Description
13.5.8.5 Cell cycle organisation.organellar DNA replication.genome stability maintenance.regulatory factor (MSH1)