Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 2.5e-210 735.3 414 100.0
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.2e-207 726.5 414 93.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.5e-207 726.1 414 97.6
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.6e-196 689.5 417 88.2
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.5e-167 593.2 413 78.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 4.5e-167 591.7 415 81.9
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.0e-166 590.5 414 75.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 2.9e-166 589.0 413 80.1
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 9.7e-162 573.9 413 80.4
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.8e-160 569.7 418 76.3
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 4.1e-160 568.5 415 75.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 9.1e-160 567.4 418 78.7
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 4.5e-159 565.1 396 81.6
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 5.9e-159 564.7 420 75.0
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 6.5e-158 561.2 414 78.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.6e-156 556.6 413 78.0
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.1e-156 556.2 415 72.3
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.7e-156 555.8 421 75.8
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.8e-155 553.1 421 78.1
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.3e-155 552.7 421 74.6
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.2e-155 551.6 414 72.0
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.5e-154 550.1 422 75.8
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.3e-154 548.9 418 73.9
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 5.7e-154 548.1 416 78.6
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 9.7e-154 547.4 414 72.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.7e-153 546.6 421 70.8
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 2.2e-153 546.2 412 77.7
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.8e-153 545.8 414 77.1
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.8e-153 545.0 421 71.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.8e-153 545.0 415 73.7
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.3e-153 544.7 421 75.1
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 8.2e-153 544.3 417 75.8
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 8.2e-153 544.3 416 76.2
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.4e-152 543.5 415 73.5
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.4e-152 543.5 415 74.7
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.8e-152 543.1 415 73.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 5.3e-152 541.6 416 73.8
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 7.0e-152 541.2 415 71.1
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 9.1e-152 540.8 414 71.7
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.2e-151 540.4 415 70.8
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.6e-151 540.0 414 72.5
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.0e-150 537.3 416 73.3
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.1e-149 533.9 415 72.0
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.5e-149 533.5 415 73.7
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.9e-149 533.1 418 76.1
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 2.5e-149 532.7 413 76.8
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.6e-148 528.9 413 71.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 8.0e-148 527.7 428 67.8
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 2.3e-147 526.2 397 75.3
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 4.0e-147 525.4 423 70.2
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 6.8e-147 524.6 414 71.5
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 8.8e-147 524.2 423 70.0
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-146 523.9 423 70.2
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.2e-146 523.9 415 72.3
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.4e-146 522.3 419 68.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 9.8e-146 520.8 417 75.5
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 2.8e-145 519.2 395 77.0
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 2.8e-145 519.2 417 71.7
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.4e-144 516.9 421 72.0
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.1e-141 507.3 423 68.3
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.1e-141 507.3 417 68.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.3e-139 499.6 422 68.2
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 4.0e-139 498.8 422 66.6
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.0e-139 498.8 418 66.7
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.8e-139 498.0 418 69.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.8e-139 498.0 433 68.1
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.4e-138 495.7 418 72.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.4e-136 490.3 427 70.7
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.4e-136 489.6 417 65.2
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.4e-136 489.6 418 66.3
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.1e-136 489.2 423 70.4
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.1e-136 488.8 417 70.0
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 9.2e-136 487.6 418 67.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.5e-135 485.7 336 77.1
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.9e-135 485.0 436 66.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 7.7e-135 484.6 414 71.0
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.6e-134 481.5 329 77.8
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.1e-133 480.7 411 68.9
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.9e-133 479.9 414 69.3
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.3e-133 479.2 394 70.6
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.1e-132 476.5 412 68.2
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 2.8e-132 476.1 438 60.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.8e-132 476.1 415 63.6
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.3e-131 473.0 326 78.2
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.5e-130 470.3 322 78.0
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.4e-130 469.2 411 63.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.3e-129 467.2 415 61.9
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 3.7e-129 465.7 415 62.2
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.1e-128 464.2 414 61.6
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 3.2e-128 462.6 420 61.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 4.1e-128 462.2 348 72.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-127 459.9 329 75.1
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 2.0e-127 459.9 329 75.1
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.7e-126 456.8 322 76.4
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.3e-126 456.4 348 71.6
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 8.6e-126 454.5 394 62.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 5.6e-125 451.8 420 60.2
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.6e-124 450.3 446 58.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 8.0e-124 448.0 396 62.4
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.9e-121 439.5 419 60.4
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.5e-117 426.4 400 65.8
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 1.2e-114 417.5 401 63.3
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.8e-114 415.2 413 59.8
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.1e-108 396.7 416 58.4
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-107 394.4 377 57.8
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 6.4e-105 385.2 218 89.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.4e-104 383.3 377 56.8
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.9e-101 373.6 281 80.8
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.1e-100 370.2 415 53.5
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 4.0e-99 365.9 430 53.3
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 7.1e-96 355.1 447 52.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.4e-91 340.9 443 50.6
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.0e-90 337.0 290 64.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.9e-88 330.5 371 59.6
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 4.8e-84 315.8 340 56.2
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 3.4e-82 309.7 352 53.7
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.6e-77 291.6 168 85.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 3.1e-75 286.6 153 92.2
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-73 281.2 339 57.8
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.2e-71 274.6 283 57.6
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-60 238.0 137 88.3
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.8e-60 236.1 156 75.0
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 1.8e-54 217.6 114 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 5.7e-53 212.6 167 65.9
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 8.5e-49 198.7 116 85.3
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 3.6e-47 193.4 263 49.4
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-46 191.4 120 80.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-43 181.8 159 60.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.2e-41 174.1 284 45.4
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.0e-38 165.2 156 50.6
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 8.2e-36 155.6 420 34.3
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.8e-33 146.7 185 50.3
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.1e-27 128.6 116 59.5
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.5e-26 123.2 64 90.6
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.5e-26 123.2 161 50.9
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 7.7e-26 122.5 72 83.3
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.7e-25 121.3 156 57.1
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.5e-25 119.4 64 87.5
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.2e-24 116.7 97 63.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 5.5e-24 116.3 68 83.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 9.5e-24 115.5 141 51.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.6e-23 113.6 68 82.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 4.7e-23 113.2 66 83.3
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 9.2e-19 99.0 108 52.8
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.9e-08 64.7 41 78.0
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.1e-06 57.4 94 70.2


User provided reference genes

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