Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 3.3e-145 518.5 283 100.0
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 9.7e-121 437.2 276 88.8
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.5e-118 429.9 273 80.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.2e-116 422.2 303 74.3
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-103 380.2 216 87.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 7.0e-87 324.7 284 62.7
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 3.6e-75 285.8 339 57.8
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.7e-75 285.4 339 52.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 8.0e-75 284.6 339 54.9
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.8e-74 283.5 340 51.2
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 2.0e-73 280.0 333 53.8
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 5.8e-73 278.5 339 53.4
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.7e-72 276.9 238 64.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 8.3e-72 274.6 241 61.8
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.1e-71 274.2 339 48.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.2e-71 272.7 247 61.1
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.4e-71 271.9 237 62.0
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 9.2e-71 271.2 238 63.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 4.6e-70 268.9 239 61.9
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.6e-70 268.9 238 61.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 4.6e-70 268.9 238 61.8
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 6.0e-70 268.5 246 61.0
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 7.8e-70 268.1 245 58.8
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.0e-69 267.7 239 60.7
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.7e-69 266.9 335 49.3
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.3e-69 266.5 241 62.2
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 3.0e-69 266.2 336 48.8
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 3.9e-69 265.8 245 59.6
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 3.9e-69 265.8 241 59.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 6.6e-69 265.0 240 60.4
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 8.6e-69 264.6 250 58.0
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.1e-68 264.2 240 60.0
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.5e-68 263.8 246 58.9
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.9e-68 263.5 245 58.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 2.5e-68 263.1 246 58.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.5e-68 263.1 324 50.9
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.5e-68 263.1 252 57.5
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 3.3e-68 262.7 240 61.7
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.6e-68 261.9 240 60.4
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.6e-68 261.9 240 60.4
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 7.3e-68 261.5 240 61.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.3e-68 261.5 243 60.5
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 7.3e-68 261.5 246 58.9
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 9.5e-68 261.2 239 59.8
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.6e-67 260.4 239 60.7
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.6e-67 260.4 247 58.7
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.1e-67 260.0 250 58.0
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-67 259.6 240 60.0
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 3.6e-67 259.2 253 56.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 3.6e-67 259.2 338 49.4
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 3.6e-67 259.2 310 48.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 4.7e-67 258.8 252 56.3
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.7e-67 258.8 243 59.7
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.7e-67 258.8 241 57.7
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 6.2e-67 258.5 312 48.7
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 8.1e-67 258.1 254 56.7
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 8.1e-67 258.1 293 51.2
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 8.1e-67 258.1 312 48.7
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.1e-66 257.7 252 56.0
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.1e-66 257.7 242 57.0
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.8e-66 256.9 292 50.7
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.0e-66 255.8 239 58.2
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.2e-66 255.4 248 59.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.8e-66 255.0 251 55.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 6.8e-66 255.0 239 56.9
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 6.8e-66 255.0 312 48.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.2e-65 254.2 251 56.2
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.2e-65 254.2 268 54.9
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.2e-65 254.2 240 57.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.0e-65 253.4 249 57.8
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.0e-65 253.4 239 59.4
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.0e-65 253.4 239 59.4
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 5.8e-65 251.9 226 61.9
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 7.5e-65 251.5 244 57.8
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 7.5e-65 251.5 252 55.6
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 9.9e-65 251.1 246 56.1
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 9.9e-65 251.1 248 56.0
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 9.9e-65 251.1 248 56.0
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.7e-64 250.4 236 59.3
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.7e-64 250.4 245 56.7
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.2e-64 250.0 238 59.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.9e-64 249.6 332 52.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.9e-64 248.8 237 58.6
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 4.9e-64 248.8 241 58.9
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.9e-64 248.8 240 57.5
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 8.3e-64 248.1 264 55.7
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.1e-63 247.7 239 59.4
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.1e-63 247.7 239 59.4
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.1e-63 247.7 216 66.2
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.4e-63 247.3 240 57.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.4e-63 247.3 264 55.3
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.4e-63 247.3 239 59.0
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.4e-63 246.5 321 52.0
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.2e-63 246.1 247 54.7
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 5.4e-63 245.4 322 53.4
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 7.1e-63 245.0 310 47.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.2e-62 244.2 238 58.4
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.1e-62 243.4 141 85.1
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.0e-62 241.9 237 57.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 7.8e-62 241.5 254 52.0
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.7e-61 240.4 237 56.5
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.7e-61 240.4 237 56.5
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.7e-61 240.4 237 56.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 8.6e-61 238.0 331 48.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.3e-60 236.1 237 55.7
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 5.6e-60 235.3 235 55.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.6e-59 233.8 226 57.5
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.1e-59 233.4 235 55.3
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.6e-59 232.6 246 54.5
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 1.1e-58 231.1 241 53.1
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 3.1e-58 229.6 253 51.8
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.2e-58 228.8 255 52.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.3e-53 214.2 226 51.3
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.4e-47 192.2 194 56.2
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.7e-46 189.9 180 61.7
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 4.6e-46 189.1 130 70.8
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.9e-44 183.7 295 40.0
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.5e-44 183.3 130 69.2
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 4.3e-36 156.0 180 51.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.0e-33 147.1 245 40.8
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-29 134.0 168 45.8
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.9e-29 132.9 86 72.1
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.9e-28 130.6 81 75.3
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 5.6e-28 129.0 137 54.7
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 7.6e-25 118.6 155 50.3
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.0e-21 106.7 280 32.9
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.9e-20 104.0 47 100.0
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.3e-20 102.8 144 48.6
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.4e-18 97.8 61 73.8
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.5e-17 94.4 114 46.5
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.4e-17 93.2 55 76.4
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.4e-15 87.8 71 60.6
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 4.2e-15 86.3 68 61.8
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.6e-14 83.2 66 60.6
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.6e-14 82.8 68 60.3
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.4e-13 81.3 83 51.8
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.1e-13 79.3 56 64.3
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-12 77.8 55 63.6
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.5e-12 77.8 56 62.5
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 2.5e-12 77.0 42 83.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.7e-12 75.9 55 61.8
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 7.4e-12 75.5 54 68.5
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.4e-10 70.5 53 60.4
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-06 57.8 62 48.4


User provided reference genes

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