Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-121 439.1 236 100.0
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-115 419.9 228 98.7
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 8.4e-94 347.4 220 88.2
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.4e-64 249.6 216 70.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-60 236.5 216 66.2
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.7e-57 225.7 217 65.4
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 4.5e-55 218.8 221 62.4
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 3.4e-50 202.6 264 51.5
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.3e-49 200.7 263 52.5
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 6.3e-49 198.4 254 51.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 5.9e-47 191.8 263 50.2
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.2e-45 185.7 263 50.2
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 3.6e-44 182.6 263 49.4
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.0e-43 179.1 259 45.9
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 8.8e-43 177.9 253 48.2
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 8.3e-41 171.4 254 46.5
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.8e-40 170.2 250 45.6
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 2.4e-40 169.9 255 46.3
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.4e-40 169.9 261 46.7
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 5.4e-40 168.7 261 43.3
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.2e-39 167.5 256 45.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 3.5e-39 166.0 259 43.6
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 3.5e-39 166.0 260 44.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.0e-38 164.5 231 48.1
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.3e-38 164.1 256 44.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.3e-38 163.3 257 44.4
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.3e-38 163.3 256 44.9
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.8e-38 162.5 255 43.5
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 5.0e-38 162.2 254 43.3
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 6.6e-38 161.8 260 45.0
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 6.6e-38 161.8 250 44.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.6e-38 161.4 233 47.2
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.6e-38 161.4 254 43.7
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.6e-38 161.4 259 43.6
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.6e-38 161.4 254 43.7
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-37 161.0 209 49.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.9e-37 160.2 256 42.6
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.5e-37 159.8 252 42.9
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.5e-37 159.8 262 41.6
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.3e-37 159.5 255 43.1
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.3e-37 159.1 254 43.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.6e-37 158.7 258 43.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 7.2e-37 158.3 257 44.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 7.2e-37 158.3 257 43.2
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 9.5e-37 157.9 266 42.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.1e-36 156.8 261 42.9
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.8e-36 156.4 263 42.6
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 2.8e-36 156.4 252 42.9
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 2.8e-36 156.4 251 41.8
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.8e-36 156.4 209 48.3
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.6e-36 156.0 259 42.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 4.7e-36 155.6 255 43.9
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.4e-35 154.1 241 44.4
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.3e-35 153.3 267 42.7
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.3e-35 153.3 241 44.8
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.0e-35 152.9 263 42.6
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 3.0e-35 152.9 168 56.0
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.0e-35 152.5 246 44.3
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 6.8e-35 151.8 256 41.8
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 8.9e-35 151.4 241 43.2
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 8.9e-35 151.4 254 40.2
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.6e-34 149.8 263 40.3
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.6e-34 149.8 162 58.0
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 3.4e-34 149.4 153 56.9
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.4e-34 149.1 167 55.7
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 4.4e-34 149.1 162 56.8
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.7e-34 148.7 155 61.3
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 5.7e-34 148.7 252 42.1
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.3e-33 147.5 275 41.1
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.3e-33 147.5 146 60.3
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 2.2e-33 146.7 252 41.3
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.7e-33 146.0 258 39.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.7e-33 146.0 260 40.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.9e-33 145.6 263 41.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 8.3e-33 144.8 257 40.9
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 1.1e-32 144.4 240 42.1
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 3.2e-32 142.9 261 41.0
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.1e-32 142.5 259 42.9
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.1e-32 142.5 263 40.7
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.1e-32 142.5 143 58.7
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 7.0e-32 141.7 257 41.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 7.0e-32 141.7 253 41.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 9.2e-32 141.4 144 59.0
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 9.2e-32 141.4 144 59.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 9.2e-32 141.4 249 41.8
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 9.2e-32 141.4 260 40.8
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.2e-31 141.0 254 42.1
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.2e-31 141.0 144 58.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.2e-31 141.0 247 40.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-31 140.2 237 41.8
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.7e-31 139.8 245 40.4
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.5e-31 139.4 144 58.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.6e-31 139.0 260 37.3
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.9e-31 138.7 265 39.2
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.3e-30 137.5 263 38.8
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.3e-30 137.5 263 39.9
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.3e-30 136.7 247 39.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 3.0e-30 136.3 249 40.6
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 6.6e-30 135.2 241 41.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 6.6e-30 135.2 236 39.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.1e-29 134.4 247 39.3
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 3.3e-29 132.9 289 36.7
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 7.3e-29 131.7 265 40.4
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.2e-28 131.0 245 39.6
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-28 130.6 161 50.9
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.1e-28 130.2 172 52.9
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 2.1e-28 130.2 148 52.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-27 127.1 277 38.3
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.1e-27 126.3 263 38.8
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.1e-27 126.3 192 43.2
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.2e-26 124.4 263 38.4
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 2.6e-26 123.2 255 36.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.4e-25 118.6 263 37.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.4e-24 116.7 225 37.8
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.1e-24 115.9 263 37.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.1e-24 115.9 251 37.5
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.9e-22 109.4 233 38.2
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.6e-18 96.7 111 52.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 3.4e-18 96.3 211 35.1
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.6e-14 82.0 56 75.0
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.6e-13 79.0 141 39.7
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 4.0e-11 72.8 108 46.3
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.2e-10 71.2 154 35.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 5.8e-10 68.9 47 72.3
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 9.9e-10 68.2 54 63.0
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 3.2e-08 63.2 48 64.6
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 5.4e-08 62.4 41 73.2
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 5.4e-08 62.4 41 73.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.6e-07 60.8 152 32.9


User provided reference genes

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