Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 0.0e+00 1192.9 790 100.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.5e-288 996.1 786 81.2
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.2e-200 704.1 874 53.0
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.0e-199 701.0 822 55.5
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.6e-197 693.7 822 52.7
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.5e-147 527.7 522 80.1
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.1e-120 437.6 228 96.5
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.8e-84 318.2 788 32.9
PGSC0003DMG400026892 Solanum tuberosum HOM05D006136 ORTHO05D007244 5.0e-82 310.1 359 82.2
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.0e-79 300.8 792 31.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.4e-76 292.0 264 57.6
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.4e-76 291.2 792 34.5
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 5.3e-76 290.0 848 30.5
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.2e-75 288.9 828 36.4
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 2.7e-75 287.7 766 31.1
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 2.1e-72 278.1 803 32.0
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.1e-72 278.1 774 30.5
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.6e-72 277.3 474 38.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 5.7e-70 270.0 804 29.1
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 2.2e-69 268.1 793 31.0
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 6.3e-69 266.5 836 29.1
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.8e-68 265.0 291 49.8
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 1.3e-66 258.8 786 30.8
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 8.6e-66 256.1 813 29.8
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.1e-65 255.8 804 34.2
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.5e-65 255.4 802 37.9
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 2.3e-63 248.1 267 49.8
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.2e-62 245.7 801 34.5
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 3.4e-62 244.2 793 28.4
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 5.7e-62 243.4 862 30.7
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 9.8e-62 242.7 263 47.9
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.3e-61 242.3 514 35.2
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 3.7e-61 240.7 868 28.0
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.8e-60 238.4 799 30.4
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.8e-60 238.4 826 28.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 5.4e-60 236.9 799 35.4
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 9.2e-60 236.1 514 34.6
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.0e-59 235.0 829 27.6
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.7e-59 234.6 802 28.4
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 4.5e-59 233.8 775 26.8
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.9e-59 233.4 806 27.8
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.3e-58 232.3 796 37.1
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.3e-58 231.5 804 28.1
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 3.8e-58 230.7 789 27.5
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.8e-58 230.7 805 27.8
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 3.8e-58 230.7 792 28.8
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.8e-58 230.7 272 45.6
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.5e-57 228.8 271 47.2
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.9e-57 228.4 288 45.1
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 4.3e-57 227.3 801 28.1
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 4.3e-57 227.3 866 28.3
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 9.5e-57 226.1 824 29.9
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 2.8e-56 224.6 829 27.9
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 4.7e-56 223.8 797 27.4
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 8.0e-56 223.0 864 26.9
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 6.8e-55 219.9 284 45.1
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 6.8e-55 219.9 815 28.7
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 8.9e-55 219.5 253 47.8
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.5e-54 218.8 231 51.1
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.6e-54 218.0 223 52.0
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 5.7e-54 216.9 812 26.7
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 7.5e-54 216.5 287 39.4
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 7.5e-54 216.5 787 31.0
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.3e-53 215.7 479 33.6
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.7e-53 215.3 793 26.9
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 2.2e-53 214.9 271 45.0
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.2e-53 214.9 784 26.9
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 8.3e-53 213.0 223 49.3
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.1e-52 212.6 280 44.6
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 1.1e-52 212.6 275 45.8
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.4e-52 212.2 213 50.7
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 3.2e-52 211.1 798 30.6
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 4.1e-52 210.7 774 26.7
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 5.4e-52 210.3 282 42.6
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 7.0e-52 209.9 273 43.6
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 9.2e-52 209.5 800 31.6
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.2e-51 209.1 223 49.3
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.2e-51 209.1 817 27.1
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 2.7e-51 208.0 794 34.0
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 4.6e-51 207.2 791 27.9
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 7.8e-51 206.5 225 48.4
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 7.8e-51 206.5 807 26.9
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.0e-50 206.1 223 48.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.3e-50 205.7 225 49.3
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.3e-50 204.9 223 49.3
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.9e-50 204.1 281 40.6
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 6.6e-50 203.4 778 27.8
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 6.6e-50 203.4 515 33.6
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.3e-49 201.1 271 42.1
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 9.5e-49 199.5 810 27.8
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.2e-48 199.1 184 61.4
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.1e-47 196.1 798 27.7
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 4.0e-47 194.1 808 26.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 8.9e-47 193.0 786 26.6
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 1.5e-46 192.2 713 31.8
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.0e-46 191.8 812 26.6
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.1e-44 186.0 273 41.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 2.0e-43 181.8 231 44.6
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.5e-41 174.9 163 49.7
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 3.3e-41 174.5 781 27.7
PGSC0003DMG400009839 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.6e-40 172.2 254 48.8
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-40 171.8 287 37.3
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 4.1e-36 157.5 224 38.8
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.2e-35 156.0 434 28.1
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 4.7e-32 144.1 142 53.5
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.1e-28 132.9 97 64.9
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 4.1e-28 131.0 228 33.3
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 4.1e-28 131.0 325 33.2
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.1e-27 128.6 97 61.9
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.7e-26 125.6 182 39.6
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.4e-23 115.9 298 32.2
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.4e-20 105.9 737 22.4
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 2.5e-17 95.1 117 47.0
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 9.0e-15 86.7 81 46.9
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.5e-14 85.9 60 73.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 3.4e-14 84.7 158 39.2
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 4.5e-14 84.3 76 44.7
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 8.4e-13 80.1 151 33.8
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.0e-10 73.2 77 54.5
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.1e-09 69.7 159 35.2
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.5e-09 69.3 74 52.7
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 1.5e-09 69.3 146 35.6
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 4.3e-09 67.8 74 52.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 4.3e-09 67.8 74 52.7
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 3.1e-07 61.6 154 30.5
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 5.8e-06 57.4 76 40.8


User provided reference genes

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