Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006910 Solanum pennellii HOM05D004601 ORTHO05D005806 1.5e-83 312.8 158 100.0
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 2.0e-83 312.4 157 100.0
Solyc07g017990.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 2.2e-82 308.9 157 99.4
Nitab4.5_0000056g0070 Nicotiana tabacum HOM05D004601 ORTHO05D005806 1.6e-72 276.2 184 80.4
Nitab4.5_0006199g0010 Nicotiana tabacum HOM05D004601 ORTHO05D005806 6.1e-72 274.2 183 80.3
Peaxi162Scf00231g01116 Petunia axillaris HOM05D004601 ORTHO05D005806 8.8e-71 270.4 160 86.2
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 1.0e-58 230.3 140 80.7
CAN.G285.3 Capsicum annuum HOM05D004601 ORTHO05D005806 4.2e-57 224.9 127 90.6
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 4.2e-57 224.9 141 79.4
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 1.2e-56 223.4 142 80.3
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 1.2e-56 223.4 142 80.3
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 1.6e-56 223.0 142 79.6
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 2.7e-56 222.2 141 78.0
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 3.6e-56 221.9 141 78.0
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 3.6e-56 221.9 140 80.0
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 4.7e-56 221.5 141 79.4
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 6.1e-56 221.1 141 77.3
ClCG11G011730 Citrullus lanatus HOM05D004601 ORTHO05D005806 8.0e-56 220.7 141 79.4
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 8.0e-56 220.7 140 79.3
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 1.4e-55 219.9 142 78.9
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 1.4e-55 219.9 140 80.7
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 1.4e-55 219.9 141 78.0
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 2.3e-55 219.2 142 76.8
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 2.3e-55 219.2 140 77.9
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 2.3e-55 219.2 140 77.1
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 2.3e-55 219.2 140 77.1
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 3.0e-55 218.8 142 78.2
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 3.0e-55 218.8 142 78.2
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 4.0e-55 218.4 142 77.5
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 4.0e-55 218.4 141 75.9
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 4.0e-55 218.4 140 78.6
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 5.2e-55 218.0 141 75.9
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 6.7e-55 217.6 142 77.5
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 6.7e-55 217.6 142 77.5
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 6.7e-55 217.6 141 77.3
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 8.8e-55 217.2 142 77.5
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 1.1e-54 216.9 142 77.5
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 1.1e-54 216.9 142 77.5
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 1.5e-54 216.5 141 75.9
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 2.6e-54 215.7 142 74.6
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 4.4e-54 214.9 140 77.1
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 5.7e-54 214.5 142 76.8
Lalb_Chr00c63g0413841 Lupinus albus HOM05D004601 ORTHO05D005806 7.5e-54 214.2 141 75.9
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 7.5e-54 214.2 141 75.9
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 7.5e-54 214.2 142 76.1
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 9.7e-54 213.8 142 78.2
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 1.3e-53 213.4 140 77.1
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 1.7e-53 213.0 141 75.2
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 4.8e-53 211.5 139 72.7
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 4.8e-53 211.5 141 75.9
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 6.3e-53 211.1 142 72.5
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 8.2e-53 210.7 139 71.9
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 1.1e-52 210.3 140 75.0
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 4.1e-52 208.4 141 73.8
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 4.1e-52 208.4 139 71.9
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 5.3e-52 208.0 138 77.5
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 5.3e-52 208.0 141 75.2
Haze_22027 Corylus avellana HOM05D004601 ORTHO05D005806 9.1e-52 207.2 139 74.8
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 4.5e-51 204.9 159 67.3
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 7.7e-51 204.1 141 74.5
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 7.7e-51 204.1 141 74.5
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 1.0e-50 203.8 141 73.8
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 1.3e-50 203.4 141 72.3
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 1.3e-50 203.4 141 72.3
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 1.5e-49 199.9 147 70.7
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 1.5e-49 199.9 154 68.2
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 1.9e-49 199.5 141 73.8
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 4.2e-49 198.4 148 70.3
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 5.5e-49 198.0 141 73.0
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 5.5e-49 198.0 141 70.9
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 7.2e-49 197.6 138 72.5
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 1.2e-48 196.8 141 71.6
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 1.6e-48 196.4 141 70.9
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 8.0e-48 194.1 141 70.2
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 1.0e-47 193.7 127 77.2
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 3.0e-47 192.2 143 67.8
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 1.2e-46 190.3 141 68.1
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 4.4e-46 188.3 141 68.8
Psat1g144440 Pisum sativum HOM05D004601 ORTHO05D005806 4.4e-46 188.3 141 69.5
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 7.5e-46 187.6 141 68.1
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 2.8e-45 185.7 139 69.1
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 2.8e-45 185.7 139 69.1
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 1.2e-43 180.3 142 64.1
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 1.6e-43 179.9 140 65.0
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 4.5e-43 178.3 143 62.2
ECA236G3967 Erigeron canadensis HOM05D004601 ORTHO05D005806 2.5e-41 172.6 108 80.6
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 5.5e-41 171.4 143 60.1
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.2e-38 163.7 142 59.2
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 6.6e-34 147.9 141 52.5
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 3.3e-33 145.6 141 51.8
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 9.5e-33 144.1 143 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 3.6e-32 142.1 141 49.6
CBR_g35050 Chara braunii HOM05D004601 ORTHO05D005806 8.3e-29 131.0 131 49.6
Actinidia07546 Actinidia chinensis HOM05D004601 ORTHO05D005806 1.5e-22 110.2 70 72.9
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 1.5e-22 110.2 65 81.5
FAN10G0665 Fragaria x ananassa HOM05D004601 ORTHO05D005806 1.1e-20 104.0 65 76.9
C02p13910 Brassica napus HOM05D004601 ORTHO05D041326 4.6e-19 98.6 143 39.2
BolC2t07510H Brassica oleracea HOM05D004601 ORTHO05D041326 6.0e-19 98.2 143 39.2
Rhsim01G0114900 Rhododendron simsii HOM05D004601 ORTHO05D005806 1.8e-15 86.7 72 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 2.6e-14 82.8 124 37.1
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 3.4e-14 82.4 64 62.5
PRCOL_00001076 Prasinoderma coloniale HOM05D004601 ORTHO05D005806 2.9e-13 79.3 158 31.6
SEGI_11293 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 9.2e-12 74.3 126 33.3
Cfa023642 Carpinus fangiana HOM05D004601 ORTHO05D005806 1.3e-10 70.5 102 38.2
Cc07_g18020 Coffea canephora HOM05D004601 ORTHO05D005806 1.3e-10 70.5 51 64.7
TAR383G0023 Trochodendron aralioides HOM05D004601 ORTHO05D005806 5.2e-07 58.5 37 67.6
Sopen01g013210 Solanum pennellii HOM05D004601 ORTHO05D393442 8.9e-07 57.8 47 57.4


User provided reference genes

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