Gene: TPR.G7576

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G7576
  • Transcript Identifier TPR.T7834
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_scaf_544 : 89941-108180 : negative

Gene Family Information

  • ID HOM05D004601
  • #Genes/#Species 158/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA7834.v2
  • id Tp57577_TGAC_v2_gene7576.v2
  • pacid 35981692

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0010165
ISO
PLAZA Integrative Orthologyresponse to X-ray AT5G57160
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT5G57160
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT5G57160
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT5G57160
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT5G57160
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G57160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G57160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G57160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036420 BRCT domain superfamily
IPR001357 BRCT domain
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR044125 DNA Ligase 4, adenylation domain
IPR000977 DNA ligase, ATP-dependent
IPR029710 DNA ligase 4
IPR012309 DNA ligase, ATP-dependent, C-terminal
IPR043502 DNA/RNA polymerase superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR012310 DNA ligase, ATP-dependent, central
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily
Mapman id Description
14.4.3.1 DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.DNA ligase component LIG4