Gene: Nitab4.5_0000056g0070

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0000056g0070
  • Transcript Identifier Nitab4.5_0000056g0070.1
  • Gene Type Coding gene
  • Location Nitab4.5_0000056 : 698040-714848 : negative

Gene Family Information

  • ID HOM05D004601
  • #Genes/#Species 158/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0000056g0070.1
  • SR1-identifier Nta14g15550.1

Descriptions

  • Description DNA ligase, ATP-dependent, N-terminal, DNA ligase, ATP-dependent, central, DNA ligase, ATP-dependent, conserved site, Domain of unknown function DUF4283
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0010165
ISO
PLAZA Integrative Orthologyresponse to X-ray AT5G57160
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT5G57160
GO:0071897
ISO
PLAZA Homology (enrichment)DNA biosynthetic process HOM05D004601
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT5G57160
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT5G57160
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT5G57160
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G57160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G57160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G57160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR029710 DNA ligase 4
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR025558 Domain of unknown function DUF4283
IPR044125 DNA Ligase 4, adenylation domain
IPR012310 DNA ligase, ATP-dependent, central
Mapman id Description
14.4.3.1 DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.DNA ligase component LIG4