Gene: Sopen07g006910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g006910
  • Transcript Identifier Sopen07g006910.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 8998978-9002696 : positive

Gene Family Information

  • ID HOM05D004601
  • #Genes/#Species 158/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g006910.1

Descriptions

  • Description Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. | ATLIG4 | FUNCTIONS IN: protein binding, DNA ligase (ATP) activity | INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus | LOCATED IN: intracellular | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase, conserved site , ATP-dependent DNA ligase , BRCT | BEST Arabidopsis thaliana protein match is: DNA ligase 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0071897
ISO
PLAZA Homology (enrichment)DNA biosynthetic process HOM05D004601

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029710 DNA ligase 4
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily
Mapman id Description
35.1 not assigned.annotated