Gene: Duzib150G1331
General Information
Structural Information
- Species Durio zibethinus
- Gene Identifier Duzib150G1331
- Transcript Identifier Duzib150G1331.01
- Gene Type Coding gene
- Location NW_019167882.1 : 16817872-16832994 : positive
Gene Family Information
- ID HOM05D004601
- #Genes/#Species 158/96
- Phylogenetic origin
- ID ORTHO05D005806
- #Genes/#Species 152/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name LOC111303467
- name XM_022899752.1
- pid XP_022755487.1
- id gene-LOC111303467
- uniprot A0A6P5ZSH9
Descriptions
- product DNA ligase 4, transcript variant X1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT5G57160 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT5G57160 |
| GO:0000723 | ISO | PLAZA Integrative Orthology | telomere maintenance | AT5G57160 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT5G57160 |
| GO:0010165 | ISO | PLAZA Integrative Orthology | response to X-ray | AT5G57160 |
| GO:0051103 | IEA | GOA Database | DNA ligation involved in DNA repair | |
| GO:0051103 | IEA | InterPro | DNA ligation involved in DNA repair | |
| GO:0071897 | IEA | GOA Database | DNA biosynthetic process | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006260 | IEA | GOA Database | DNA replication |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016874 | IEA | GOA Database | ligase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G57160 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003909 | IEA | GOA Database | DNA ligase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003910 | IEA | GOA Database | DNA ligase (ATP) activity | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G57160 |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036420 | BRCT domain superfamily |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR044125 | DNA Ligase 4, adenylation domain |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR001357 | BRCT domain |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR029710 | DNA ligase 4 |
| Mapman id | Description |
|---|---|
| 14.4.3.1 | DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.DNA ligase component LIG4 |