Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1900.2 955 100.0
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1883.6 955 98.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1842.8 955 97.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1815.0 955 95.5
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1797.7 955 94.9
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1776.1 955 93.5
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1727.6 953 92.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1616.7 964 83.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 958 82.7
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1595.9 956 83.1
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 956 82.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 958 81.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1572.8 951 81.7
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1572.4 958 81.3
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 963 80.7
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 964 80.8
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 958 80.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 961 81.2
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 958 80.8
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 962 80.8
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 965 79.6
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 963 80.9
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 939 81.9
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1553.9 956 80.4
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 956 81.0
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 949 80.3
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 949 80.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 960 80.5
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1549.3 958 80.6
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 961 79.3
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 952 80.6
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 943 80.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 946 80.4
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 962 79.7
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 962 79.7
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 958 80.1
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 953 79.5
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 959 79.6
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1539.6 949 79.7
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1537.3 942 80.8
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 960 79.7
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 937 80.8
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1532.3 946 79.6
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 958 79.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 958 80.0
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 949 80.3
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 952 79.7
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 957 79.0
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 956 79.2
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 961 78.3
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 958 79.2
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 963 78.6
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 942 80.4
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 963 78.7
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 957 77.8
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1513.0 962 78.3
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 972 77.8
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 973 77.2
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 972 77.0
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 956 78.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 970 79.2
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 968 77.6
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 972 77.5
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 941 78.3
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 964 77.6
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 971 77.0
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 957 78.0
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1495.3 965 77.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 961 78.4
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 968 77.2
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1494.2 968 77.3
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 973 76.7
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 953 77.4
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 970 76.5
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 1002 75.0
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 941 77.4
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 941 77.4
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 941 77.3
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 944 77.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 941 77.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 941 77.4
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 941 77.0
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 941 76.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 971 75.4
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 954 76.7
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 941 76.8
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 941 76.8
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 944 76.9
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 962 75.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 962 75.4
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 953 77.2
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 958 76.6
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 944 76.6
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 939 76.8
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1463.4 960 76.2
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 976 75.2
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 952 76.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1453.7 954 75.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 969 75.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 951 75.0
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1427.5 951 75.1
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1404.8 947 72.0
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1401.3 956 71.4
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1365.5 951 72.3
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1358.2 832 80.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1341.6 950 72.1
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1316.6 853 76.9
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1314.7 959 68.6
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1311.6 848 76.9
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1192.2 733 79.9
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1182.9 999 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 963 60.7
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1171.0 964 63.8
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1137.5 707 79.9
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1116.7 1020 55.7
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1081.2 940 59.6
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1079.7 665 80.8
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.4e-309 1066.2 647 81.8
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.0e-275 952.2 711 66.4
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 4.7e-220 768.8 769 51.5
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.6e-212 743.8 463 78.8
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-181 641.3 441 72.3
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.6e-129 466.1 303 71.3
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 8.1e-111 406.0 1305 25.1
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 5.8e-109 399.8 653 39.4
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 8.7e-81 306.2 202 72.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.9e-68 264.6 207 68.6
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.2e-59 234.2 180 67.2
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 3.7e-55 221.1 300 44.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 3.4e-53 214.5 134 82.8
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.1e-50 203.8 125 80.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 9.1e-38 163.3 139 61.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.1e-34 152.1 201 40.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.7e-29 135.2 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.7e-15 88.2 80 61.2
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 1.9e-06 59.3 94 42.6


User provided reference genes

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