Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 2620.9 1288 100.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 2583.5 1293 98.5
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 2332.8 1288 88.9
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 2262.3 1243 89.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 2088.9 1046 98.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1973.7 1280 76.7
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1927.5 1278 74.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1920.2 1284 73.2
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1914.0 1044 90.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1914.0 1279 74.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1911.0 1385 69.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1897.1 1279 73.2
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1891.7 1284 72.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1863.6 1288 71.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1852.8 1280 71.2
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1846.6 1282 70.6
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1840.9 1280 70.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1837.0 1282 70.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1835.1 1278 70.3
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1823.5 1282 69.7
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1816.2 1276 70.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1807.7 1286 68.7
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1803.1 1281 69.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1802.7 1279 69.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1800.0 1280 68.7
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1800.0 1278 68.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1795.8 1281 68.9
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1795.4 1275 67.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1792.7 1275 67.8
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1790.8 1365 65.4
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1786.2 1281 68.5
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1783.5 1276 69.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1782.7 1276 67.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1781.5 1269 68.2
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1774.6 1187 72.6
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1773.4 1283 67.7
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1766.9 1276 68.6
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1766.9 1276 66.6
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1762.7 1280 66.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1760.7 1282 67.6
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1758.0 1283 67.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1757.3 1283 67.6
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1753.8 1283 67.3
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1753.0 1273 66.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1751.5 1284 66.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1749.2 1279 66.0
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1746.9 1273 66.5
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1744.9 1309 66.2
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1743.4 1279 66.9
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1736.9 1246 69.8
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1736.9 1283 66.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1727.6 1281 66.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1727.2 1273 65.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1726.8 1277 66.4
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1279 65.6
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1714.5 1276 65.4
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1713.0 1275 65.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1704.1 1281 65.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1699.1 1277 64.4
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1697.9 1277 64.4
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1697.2 1290 64.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1695.2 1281 65.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1689.5 1278 65.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1685.2 1263 64.9
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1356 61.1
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1666.7 1277 64.4
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1666.4 1286 64.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1278 63.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1654.4 1285 63.7
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1653.6 1277 64.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1653.3 1285 63.7
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1652.5 1276 63.7
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1652.5 1288 63.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1651.3 1292 63.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1647.5 1291 63.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1646.3 1280 63.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1639.4 1282 63.4
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1628.6 1287 62.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1620.5 1281 61.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1620.1 1281 61.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1277 63.0
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1610.5 1230 64.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1274 62.5
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1577.8 1278 60.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1575.1 1289 61.8
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1572.0 1301 60.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1571.6 1190 66.1
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1532.3 1275 60.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1518.1 1048 70.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1439.1 1285 55.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1416.4 1030 68.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1412.9 1278 55.2
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1404.4 1184 59.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1345.9 1272 53.6
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1308.1 1281 54.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1261.5 1207 53.2
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1260.7 836 74.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1253.0 1284 53.4
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1188.7 766 74.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1186.0 943 63.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1146.3 882 62.9
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1144.0 808 69.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1141.7 782 71.4
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1135.2 834 67.6
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1107.0 838 64.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1100.9 1334 46.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1100.1 947 60.1
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1092.4 1338 45.1
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1080.5 1292 45.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 0.0e+00 1080.1 766 69.1
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 5.6e-309 1064.7 1193 46.7
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.4e-305 1050.8 947 58.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.2e-303 1047.0 1326 45.0
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.7e-292 1008.8 1147 48.9
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-274 950.7 692 67.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 9.5e-232 808.1 1485 34.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.4e-221 773.1 632 61.4
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.4e-211 739.2 506 70.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.1e-208 731.5 547 65.3
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.5e-205 719.5 501 69.9
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 8.1e-199 698.7 614 54.9
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 7.6e-189 665.6 462 72.1
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.1e-139 502.3 401 64.1
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.0e-128 464.9 322 71.1
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.0e-128 464.9 364 63.7
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 6.0e-117 426.8 334 64.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.4e-105 388.3 1393 26.3
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.9e-87 328.2 1232 25.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.3e-76 292.7 258 55.8
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.2e-72 279.6 152 86.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.1e-49 203.4 248 48.4
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 8.2e-42 177.2 128 68.0
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 8.0e-37 160.6 112 75.9
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-25 123.2 78 70.5
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.5e-14 86.7 46 87.0
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 8.9e-12 77.4 67 50.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.5e-11 76.6 50 70.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.6e-11 75.9 53 66.0
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 4.4e-11 75.1 143 33.6
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 5.8e-11 74.7 53 64.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 7.5e-11 74.3 58 56.9
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.2e-10 72.8 169 28.4
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 6.4e-10 71.2 44 77.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.1e-09 70.5 95 41.1
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.4e-09 70.1 56 57.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-09 68.6 48 64.6
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 5.4e-09 68.2 156 28.8
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 64.6
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 64.6
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 64.6
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 64.6
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 64.6
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 9.2e-09 67.4 48 64.6
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 9.2e-09 67.4 48 64.6
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.6e-08 66.6 48 62.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.0e-08 66.2 176 31.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 7.8e-08 64.3 189 31.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.0e-07 63.9 198 30.8
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.0e-07 62.4 242 27.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.1e-06 60.5 94 39.4
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.9e-06 59.7 80 42.5
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.9e-06 59.7 152 30.3
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 4.3e-06 58.5 50 54.0
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 7.3e-06 57.8 135 29.6
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 9.5e-06 57.4 106 26.4


User provided reference genes

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