Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 4.7e-60 234.2 107 100.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 1.7e-38 162.5 152 57.2
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.9e-33 144.4 72 90.3
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 8.7e-22 107.1 75 64.0
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 8.7e-22 107.1 68 64.7
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 8.7e-22 107.1 84 56.0
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.5e-21 106.3 101 48.5
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 2.5e-21 105.5 73 58.9
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 3.3e-21 105.1 68 63.2
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 7.4e-21 104.0 71 62.0
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.6e-20 102.8 73 57.5
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.6e-20 102.8 71 62.0
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.8e-20 102.1 69 62.3
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 3.7e-20 101.7 68 60.3
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 3.7e-20 101.7 107 43.9
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 3.7e-20 101.7 99 52.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 4.8e-20 101.3 72 58.3
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.8e-20 101.3 52 90.4
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 4.8e-20 101.3 69 60.9
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.2e-20 100.9 106 45.3
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 6.2e-20 100.9 68 61.8
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.1e-19 100.1 88 51.1
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 1.1e-19 100.1 105 44.8
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-19 99.8 68 63.2
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 1.4e-19 99.8 68 64.7
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.4e-19 99.8 104 45.2
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.4e-19 99.8 104 45.2
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.8e-19 99.4 68 60.3
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 2.4e-19 99.0 71 54.9
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 4.0e-19 98.2 72 55.6
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.0e-19 98.2 68 60.3
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 5.3e-19 97.8 66 59.1
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 5.3e-19 97.8 68 61.8
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 5.3e-19 97.8 73 53.4
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 5.3e-19 97.8 106 46.2
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 5.3e-19 97.8 68 61.8
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 5.3e-19 97.8 67 58.2
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 6.9e-19 97.4 68 61.8
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 9.0e-19 97.1 70 54.3
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 1.2e-18 96.7 68 60.3
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 1.2e-18 96.7 71 54.9
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.5e-18 96.3 68 60.3
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.5e-18 96.3 71 60.6
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.5e-18 96.3 70 58.6
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 2.0e-18 95.9 83 53.0
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 2.0e-18 95.9 68 60.3
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 2.0e-18 95.9 68 60.3
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 2.0e-18 95.9 73 53.4
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 2.0e-18 95.9 73 54.8
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.6e-18 95.5 68 63.2
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 4.5e-18 94.7 72 58.3
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 4.5e-18 94.7 64 65.6
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 4.5e-18 94.7 66 60.6
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.8e-18 94.4 84 51.2
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 5.8e-18 94.4 70 58.6
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 7.6e-18 94.0 65 60.0
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 7.6e-18 94.0 65 60.0
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 7.6e-18 94.0 69 55.1
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 7.6e-18 94.0 68 60.3
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 7.6e-18 94.0 69 59.4
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 9.9e-18 93.6 66 63.6
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 9.9e-18 93.6 83 51.8
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.3e-17 93.2 66 60.6
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.7e-17 92.8 68 58.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.7e-17 92.8 68 57.4
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.2e-17 92.4 63 58.7
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 2.2e-17 92.4 68 57.4
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 2.9e-17 92.0 69 52.2
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.9e-17 92.0 69 58.0
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 3.8e-17 91.7 65 58.5
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 3.8e-17 91.7 65 58.5
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 3.8e-17 91.7 65 58.5
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 3.8e-17 91.7 63 60.3
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 4.9e-17 91.3 66 57.6
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 4.9e-17 91.3 68 58.8
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 4.9e-17 91.3 68 58.8
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.9e-17 91.3 66 59.1
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.9e-17 91.3 72 58.3
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 4.9e-17 91.3 66 57.6
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 4.9e-17 91.3 68 57.4
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 6.4e-17 90.9 69 62.3
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 8.4e-17 90.5 69 56.5
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 8.4e-17 90.5 73 58.9
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 8.4e-17 90.5 69 59.4
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.1e-16 90.1 68 55.9
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.1e-16 90.1 68 55.9
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.1e-16 90.1 73 58.9
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.4e-16 89.7 65 58.5
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.4e-16 89.7 68 60.3
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 1.9e-16 89.4 63 57.1
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 1.9e-16 89.4 68 58.8
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.9e-16 89.4 68 60.3
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 1.9e-16 89.4 68 57.4
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 2.4e-16 89.0 73 52.1
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 3.2e-16 88.6 65 56.9
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 3.2e-16 88.6 68 51.5
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 5.5e-16 87.8 87 44.8
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 5.5e-16 87.8 66 57.6
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 5.5e-16 87.8 66 59.1
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 7.1e-16 87.4 99 46.5
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 7.1e-16 87.4 76 53.9
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 7.1e-16 87.4 66 57.6
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.1e-16 87.4 68 52.9
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.1e-16 87.4 68 52.9
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 7.1e-16 87.4 64 62.5
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 7.1e-16 87.4 70 55.7
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 9.3e-16 87.0 68 58.8
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 9.3e-16 87.0 63 57.1
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.2e-15 86.7 106 42.5
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.2e-15 86.7 73 53.4
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.2e-15 86.7 68 52.9
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.6e-15 86.3 68 57.4
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 2.1e-15 85.9 66 56.1
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 2.1e-15 85.9 98 44.9
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 2.1e-15 85.9 68 54.4
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.7e-15 85.5 69 53.6
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.7e-15 85.5 68 51.5
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 2.7e-15 85.5 88 50.0
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 3.5e-15 85.1 68 51.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 4.6e-15 84.7 62 56.5
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 4.6e-15 84.7 68 51.5
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 6.0e-15 84.3 70 54.3
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.0e-15 84.3 68 55.9
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 7.9e-15 84.0 104 42.3
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 7.9e-15 84.0 65 56.9
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 7.9e-15 84.0 65 56.9
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 7.9e-15 84.0 70 51.4
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 7.9e-15 84.0 68 51.5
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 7.9e-15 84.0 104 43.3
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.0e-14 83.6 62 54.8
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 1.0e-14 83.6 68 52.9
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.3e-14 83.2 68 52.9
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 1.3e-14 83.2 70 47.1
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 1.8e-14 82.8 68 52.9
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.8e-14 82.8 70 54.3
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.8e-14 82.8 68 55.9
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.3e-14 82.4 89 42.7
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 3.9e-14 81.6 76 50.0
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 3.9e-14 81.6 73 52.1
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 5.1e-14 81.3 65 55.4
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.1e-14 81.3 68 50.0
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 6.7e-14 80.9 70 52.9
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 6.7e-14 80.9 68 48.5
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 6.7e-14 80.9 96 45.8
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 8.7e-14 80.5 66 53.0
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 8.7e-14 80.5 72 47.2
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-13 80.1 66 53.0
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.1e-13 80.1 70 48.6
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.1e-13 80.1 66 51.5
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.5e-13 79.7 68 48.5
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 1.5e-13 79.7 68 48.5
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.5e-13 79.7 63 55.6
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.5e-13 79.7 67 49.3
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.9e-13 79.3 68 50.0
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 2.5e-13 79.0 72 51.4
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.5e-13 79.0 68 48.5
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 2.5e-13 79.0 63 57.1
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 4.3e-13 78.2 68 48.5
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 4.3e-13 78.2 68 48.5
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 7.4e-13 77.4 74 43.2
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 1.6e-12 76.3 72 47.2
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 2.8e-12 75.5 60 55.0
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 3.7e-12 75.1 81 48.1
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.7e-12 75.1 67 47.8
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 4.8e-12 74.7 68 48.5
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 6.2e-12 74.3 52 61.5
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 3.1e-11 72.0 63 49.2
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 4.0e-11 71.6 68 47.1
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-10 69.7 68 45.6
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.5e-10 69.7 68 45.6
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 2.6e-10 68.9 51 62.7
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 2.2e-09 65.9 68 44.1
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 2.2e-09 65.9 68 44.1
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 6.5e-09 64.3 66 40.9
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 4.6e-07 58.2 50 50.0


User provided reference genes

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