Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 3424.4 1783 100.0
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 3239.9 1703 98.3
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 3048.1 1781 89.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2787.7 1702 86.0
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2584.7 1684 81.7
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2556.6 1622 83.2
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2363.2 1718 71.3
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2340.8 1789 69.9
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2311.2 1799 68.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2241.8 1802 65.3
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2229.1 1782 67.2
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2220.3 1787 65.4
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2218.4 1811 64.9
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2214.1 1791 65.8
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2210.6 1805 65.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2208.7 1813 65.6
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2198.7 1817 65.4
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2180.6 1810 63.8
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2175.6 1872 62.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2172.9 1815 64.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2168.3 1793 64.5
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2166.0 1822 63.5
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2161.7 1799 64.6
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2156.7 1794 64.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2150.6 1784 65.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2144.8 1875 62.8
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2142.5 1775 64.3
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2141.3 1750 63.8
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2130.9 1773 63.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2127.8 1796 63.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2127.4 1815 62.9
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2125.9 1829 63.0
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2122.1 1808 63.0
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2112.0 1751 63.6
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2111.3 1831 62.9
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2110.1 1826 62.7
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2107.8 1700 65.8
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2097.8 1813 63.0
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2089.7 1815 62.5
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2087.0 1815 62.6
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2084.7 1816 62.5
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2083.1 1804 62.5
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2068.1 1777 61.8
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2063.9 1811 61.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2058.1 1779 62.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2056.6 1745 62.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2050.0 1768 62.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2041.5 1813 61.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2041.5 1806 61.2
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2040.0 1868 59.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2032.7 1815 61.4
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2032.3 1774 62.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2020.4 1518 71.0
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2017.3 1745 61.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2006.9 1819 60.8
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2006.1 1824 60.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2003.8 1864 59.4
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1999.9 1768 61.4
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1997.6 1802 60.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1996.9 1647 64.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1991.5 1827 59.3
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1975.3 1814 58.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1968.4 1829 58.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1947.9 1650 62.7
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1944.9 1817 57.8
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1942.5 1812 57.8
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1940.2 1696 61.3
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1931.0 1781 58.7
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1920.2 1738 60.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1919.8 1820 56.7
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1916.0 1814 56.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1911.7 1822 56.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1911.7 1822 56.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1907.9 1823 57.4
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1900.9 1823 56.9
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1900.9 1823 56.9
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1892.9 1823 58.6
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1890.5 1815 56.3
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1887.1 1826 56.0
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1887.1 1825 56.1
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1884.8 1514 65.9
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1874.0 1824 56.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1870.9 1836 55.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1859.7 1455 66.7
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1855.5 1873 55.3
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1855.5 1490 64.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1854.0 1538 64.0
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1766.5 1870 54.5
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1724.5 1702 56.2
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1640.2 1352 65.0
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1636.3 1486 58.5
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1565.4 1764 50.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1542.3 1603 53.5
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1439.5 1395 57.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1434.9 1785 46.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1343.2 1760 44.4
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1326.2 1749 44.7
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1313.9 1229 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1293.5 1734 43.4
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1268.8 982 71.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1127.1 1009 60.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.3e-300 1036.6 943 60.3
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.7e-292 1008.1 1073 51.3
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 6.0e-285 985.3 1517 39.8
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 4.8e-282 975.7 915 58.9
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 2.2e-258 897.1 479 95.2
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.4e-246 857.8 785 58.2
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.2e-245 854.7 647 68.0
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.0e-216 757.7 657 61.5
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.2e-186 657.9 901 44.1
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 8.1e-173 612.8 507 64.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.8e-157 561.2 555 56.0
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.9e-151 540.8 745 42.6
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.2e-146 525.0 488 60.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 3.4e-139 501.1 433 59.8
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 5.5e-137 493.8 562 52.0
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.2e-133 481.9 503 51.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 5.9e-131 473.8 478 55.6
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.5e-118 432.6 456 54.8
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.0e-111 408.3 441 53.3
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.7e-109 401.4 370 60.3
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.8e-96 358.6 350 54.6
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.9e-95 353.6 282 63.8
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.7e-93 348.2 327 56.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.4e-92 346.3 297 63.3
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 3.9e-90 338.2 425 46.8
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.1e-79 302.0 306 56.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 3.9e-74 285.0 1609 23.7
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 5.1e-58 231.5 279 47.7
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.3e-48 200.3 117 81.2
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.9e-45 189.1 120 75.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.9e-45 188.3 184 56.5
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.3e-42 180.3 536 26.5
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.3e-42 179.5 222 46.4
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.6e-38 166.0 150 61.3
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.1e-35 156.4 252 44.0
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 2.7e-35 156.0 82 95.1
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 3.6e-35 155.6 165 52.1
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.6e-35 155.2 423 31.4
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 3.2e-28 132.5 98 66.3
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 7.2e-28 131.3 140 47.1
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 7.2e-28 131.3 85 81.2
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.8e-26 126.7 70 87.1
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 5.1e-26 125.2 80 82.5
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.3e-25 122.1 96 63.5
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 5.7e-25 121.7 101 64.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 2.8e-24 119.4 97 61.9
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.8e-23 116.7 78 71.8
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.1e-23 115.5 192 39.6
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.0e-21 110.9 121 55.4
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 6.5e-21 108.2 80 67.5
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-20 107.1 78 66.7
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 9.4e-20 104.4 71 73.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.5e-17 97.1 91 60.4
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.6e-17 96.3 174 33.9
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.7e-17 94.4 68 73.5
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.7e-16 93.6 121 46.3
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.1e-15 90.9 86 58.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.4e-15 90.5 48 91.7
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.1e-15 89.0 48 89.6
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 7.0e-15 88.2 89 53.9
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-12 80.1 61 63.9
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 8.0e-11 74.7 87 51.7
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.8e-10 73.6 70 51.4
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.3e-10 73.2 109 43.1
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.0e-10 72.8 154 29.9
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.7e-10 71.6 65 56.9
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.7e-10 71.6 65 56.9
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 6.7e-10 71.6 53 66.0
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.6e-09 69.7 65 55.4
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 7.5e-09 68.2 251 27.9
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 4.8e-08 65.5 93 40.9
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 1.6e-06 60.5 68 48.5


User provided reference genes

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