Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 0.0e+00 1299.3 655 100.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 0.0e+00 1262.3 655 96.8
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 0.0e+00 1238.4 655 95.3
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 0.0e+00 1142.9 658 86.9
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 0.0e+00 1076.2 667 82.3
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 4.5e-312 1073.9 663 83.4
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 4.6e-291 1004.2 602 84.4
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 3.3e-212 742.3 658 58.8
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 1.2e-211 740.3 661 58.2
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.1e-207 727.2 661 57.8
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 1.0e-205 720.7 596 62.2
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 1.2e-195 687.2 665 55.0
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 6.8e-194 681.4 664 54.8
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.3e-189 667.2 667 53.8
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 2.3e-189 666.4 670 55.1
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 6.6e-189 664.8 670 54.0
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 8.6e-189 664.5 669 54.0
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.3e-188 662.5 670 54.5
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 1.2e-187 660.6 668 53.9
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 3.6e-187 659.1 615 55.6
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 4.7e-187 658.7 665 54.1
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 8.1e-187 657.9 670 53.9
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 1.8e-186 656.8 669 52.5
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 8.9e-186 654.4 670 53.9
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.4e-185 652.5 666 54.1
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 9.9e-185 651.0 639 54.5
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 1.9e-183 646.7 694 52.7
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.4e-183 646.4 668 52.1
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 9.3e-183 644.4 668 53.3
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.7e-182 642.9 667 53.1
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 1.0e-181 641.0 674 53.3
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 5.1e-181 638.6 650 53.2
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 6.6e-181 638.3 656 52.4
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 1.1e-180 637.5 660 53.3
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 1.1e-180 637.5 598 56.9
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 3.3e-180 636.0 620 53.9
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 2.0e-177 626.7 669 53.7
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 7.6e-177 624.8 664 52.3
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 7.6e-177 624.8 661 52.0
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 1.3e-176 624.0 776 48.5
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.3e-176 624.0 692 50.6
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 1.7e-176 623.6 669 50.4
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 3.8e-176 622.5 598 55.9
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 5.4e-175 618.6 558 57.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 7.9e-174 614.8 557 57.6
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 1.1e-172 610.9 627 53.1
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.6e-171 607.1 658 50.9
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 5.3e-170 602.1 678 52.8
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 3.4e-169 599.4 606 53.3
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 7.6e-169 598.2 618 52.6
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 2.9e-168 596.3 584 53.3
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 8.4e-168 594.7 617 51.4
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 3.2e-167 592.8 618 51.5
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 7.1e-167 591.7 623 52.3
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 9.3e-167 591.3 667 49.3
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.2e-166 590.9 666 50.6
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 1.0e-165 587.8 678 49.6
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 1.5e-164 583.9 609 50.6
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 1.9e-164 583.6 622 51.1
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 3.3e-164 582.8 617 49.9
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 3.3e-164 582.8 676 47.6
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 5.6e-164 582.0 672 48.4
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 6.2e-163 578.6 600 51.3
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 3.1e-162 576.2 614 50.8
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 3.1e-162 576.2 598 51.0
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 7.6e-161 571.6 615 50.6
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 7.6e-161 571.6 673 47.7
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.0e-160 571.2 674 48.4
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 6.5e-160 568.5 677 48.0
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 1.4e-159 567.4 595 51.3
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 7.1e-159 565.1 579 53.0
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 1.2e-158 564.3 672 48.4
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 4.6e-158 562.4 672 48.2
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 1.0e-157 561.2 612 49.5
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 8.7e-157 558.1 614 50.3
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 4.3e-156 555.8 611 48.6
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 9.6e-156 554.7 661 48.3
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 4.8e-155 552.4 607 48.1
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 2.6e-153 546.6 560 53.0
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 7.6e-153 545.0 658 46.0
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 6.5e-152 542.0 607 47.6
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 8.2e-131 471.9 608 43.8
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 1.8e-130 470.7 668 41.9
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 4.7e-126 456.1 481 52.6
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 8.8e-125 451.8 594 43.4
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 1.8e-122 444.1 552 45.3
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 4.5e-105 386.3 361 56.5
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 1.5e-103 381.3 423 53.0
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 3.9e-96 356.7 656 33.5
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 8.9e-85 318.9 584 34.8
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 2.8e-78 297.4 348 46.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.2e-75 287.7 661 29.7
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.2e-74 283.9 309 49.5
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 5.6e-71 273.1 268 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.2e-68 265.4 531 34.8
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.6e-68 264.2 533 32.1
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 3.9e-56 223.8 205 53.7
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 1.4e-42 178.7 174 51.1
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 2.4e-37 161.4 173 52.6
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 5.3e-37 160.2 173 52.0
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 6.1e-33 146.7 122 54.1
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.2e-25 122.5 226 35.0
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 4.5e-20 104.0 209 32.5
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 1.3e-19 102.4 83 53.0
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.2e-18 97.8 157 35.7
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.7e-06 58.9 204 23.0
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 3.7e-06 57.8 201 25.4
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 8.2e-06 56.6 113 27.4


User provided reference genes

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