Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.6e-251 872.5 517 100.0
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.4e-250 869.4 517 99.6
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 5.0e-248 860.9 517 95.7
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 6.2e-198 694.5 519 83.8
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 4.9e-195 684.9 519 83.2
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.2e-190 670.2 516 82.2
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 2.2e-171 606.3 523 69.6
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 2.9e-171 605.9 521 70.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 9.6e-167 590.9 521 70.8
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.6e-166 590.1 504 70.2
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.4e-164 582.4 523 65.6
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.2e-163 579.7 521 70.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 3.8e-163 578.9 521 68.9
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 6.4e-163 578.2 397 78.3
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 2.4e-157 559.7 521 67.2
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.7e-155 553.5 521 64.3
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 4.9e-155 552.0 519 68.2
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.4e-154 550.4 520 68.1
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.4e-154 549.7 479 67.8
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.2e-153 547.4 434 73.0
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.6e-153 547.0 523 63.1
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.6e-153 547.0 398 74.6
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.1e-153 546.6 519 63.6
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 7.9e-153 544.7 519 63.0
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 3.0e-152 542.7 524 63.4
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 3.9e-152 542.3 523 64.4
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.5e-151 540.4 522 63.4
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 5.6e-151 538.5 521 66.0
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.6e-150 537.0 523 63.1
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 4.8e-150 535.4 520 60.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 8.2e-150 534.6 520 62.1
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.0e-149 532.3 521 61.6
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.5e-148 530.4 522 60.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 4.9e-147 525.4 399 72.4
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.0e-145 518.5 522 60.7
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.0e-144 517.7 517 61.5
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 2.5e-143 513.1 438 67.1
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.6e-142 510.4 396 71.0
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.8e-142 509.6 513 63.2
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 1.1e-141 507.7 520 61.7
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.1e-141 507.7 522 58.8
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.4e-141 507.3 538 59.5
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 4.1e-141 505.8 522 62.6
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 4.1e-141 505.8 436 64.4
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 5.3e-141 505.4 508 62.2
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 3.4e-140 502.7 511 61.1
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.7e-139 500.4 515 61.0
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.8e-139 499.2 501 61.3
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 6.5e-139 498.4 506 59.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.1e-138 497.7 527 59.6
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 3.2e-138 496.1 523 57.7
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.2e-138 496.1 518 61.4
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.5e-138 495.4 513 63.5
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 7.2e-138 495.0 501 60.1
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 9.3e-138 494.6 491 60.1
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 1.2e-137 494.2 517 60.7
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.2e-137 494.2 434 65.0
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.6e-137 493.8 440 68.0
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 2.1e-137 493.4 376 73.4
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 4.6e-137 492.3 433 67.2
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 7.9e-137 491.5 491 55.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.0e-136 491.1 436 68.1
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.0e-136 491.1 522 59.4
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.8e-136 490.3 509 61.1
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.9e-136 489.2 515 60.8
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 8.8e-136 488.0 432 65.3
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 8.8e-136 488.0 433 62.4
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.2e-134 483.4 522 57.1
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 3.7e-134 482.6 502 60.4
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 4.8e-134 482.3 520 57.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.1e-133 481.1 434 66.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.4e-133 480.7 523 57.4
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.8e-133 480.3 396 67.9
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 5.3e-133 478.8 526 56.5
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 9.1e-133 478.0 525 60.0
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 9.1e-133 478.0 599 47.2
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.9e-130 470.3 557 56.2
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 9.4e-130 468.0 525 59.8
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 7.9e-129 464.9 512 56.1
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.0e-128 463.0 515 55.7
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 3.3e-127 459.5 524 57.8
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 5.7e-127 458.8 526 55.3
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.4e-125 453.4 525 52.2
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.2e-121 441.0 451 62.1
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 1.6e-121 440.7 371 68.7
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.0e-120 436.4 519 47.2
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 5.2e-120 435.6 477 55.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.0e-119 433.7 391 62.9
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 9.7e-119 431.4 476 55.9
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 9.7e-119 431.4 521 54.5
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.3e-118 431.0 514 53.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 8.2e-118 428.3 406 56.9
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.4e-117 426.8 395 61.0
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 9.1e-117 424.9 380 61.1
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 4.5e-116 422.5 516 52.3
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 5.9e-116 422.2 432 57.2
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.3e-115 421.0 432 53.9
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 6.5e-115 418.7 513 52.2
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.9e-114 417.2 519 48.4
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 9.4e-114 414.8 507 55.2
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.6e-113 414.1 500 56.0
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 2.1e-113 413.7 504 54.8
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.1e-113 413.7 505 51.3
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 3.6e-113 412.9 505 52.5
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 4.7e-113 412.5 508 55.3
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.4e-112 411.0 505 54.9
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.3e-111 406.4 510 55.9
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.7e-110 404.1 508 55.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 2.2e-110 403.7 506 54.3
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 5.9e-108 395.6 538 45.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 6.5e-107 392.1 446 55.2
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 7.2e-106 388.7 406 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 2.6e-103 380.2 429 55.0
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 2.1e-97 360.5 353 63.2
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-94 351.3 413 51.8
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 8.3e-94 348.6 419 52.5
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 4.0e-80 303.1 255 59.2
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 8.3e-78 295.4 399 47.9
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 3.3e-74 283.5 467 42.2
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.4e-69 268.1 184 70.7
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.9e-67 260.0 282 58.2
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.6e-60 238.0 467 31.9
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.3e-56 223.0 418 39.5
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 2.6e-47 194.1 410 32.4
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.1e-45 188.7 277 40.8
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 3.2e-45 187.2 221 46.2
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.1e-37 162.2 250 38.8
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.2e-22 111.3 592 23.3
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 3.8e-22 110.5 130 46.2
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 1.1e-18 99.0 86 57.0
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 2.2e-17 94.7 118 47.5
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 2.8e-17 94.4 81 56.8
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.2e-13 80.9 164 34.1
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 7.9e-12 76.3 163 33.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 5.1e-11 73.6 130 36.2
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 4.5e-07 60.5 118 33.1
Sed0000658 Sechium edule HOM05D000645 ORTHO05D000494 5.9e-07 60.1 300 24.3
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 5.9e-07 60.1 256 23.0
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 5.9e-07 60.1 256 23.0
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 1.0e-06 59.3 170 25.3
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 1.3e-06 58.9 142 33.1
Oeu020857.1 Olea europaea HOM05D005639 ORTHO05D290761 3.8e-06 57.4 147 48.3
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 3.8e-06 57.4 233 24.9
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 5.0e-06 57.0 357 22.1
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 5.0e-06 57.0 354 24.6
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 5.0e-06 57.0 90 36.7
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 6.5e-06 56.6 117 27.4
arahy.Tifrunner.gnm1.ann1.PH2I0N Arachis hypogaea HOM05D000645 ORTHO05D000494 8.5e-06 56.2 163 23.3


User provided reference genes

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