Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g016970 Solanum pennellii HOM05D002592 ORTHO05D003149 2.5e-30 134.8 68 100.0
Solyc06g062510.3 Solanum lycopersicum HOM05D002592 ORTHO05D003149 1.7e-10 68.9 41 82.9
Sopen06g021990 Solanum pennellii HOM05D002592 ORTHO05D003149 1.7e-10 68.9 41 82.9
PGSC0003DMG400004839 Solanum tuberosum HOM05D002592 ORTHO05D003149 1.7e-10 68.9 41 82.9
PGSC0003DMG400007769 Solanum tuberosum HOM05D002592 ORTHO05D003149 4.1e-09 64.3 41 75.6
Nitab4.5_0000300g0020 Nicotiana tabacum HOM05D002592 ORTHO05D003149 7.0e-09 63.5 41 75.6
Nitab4.5_0002656g0020 Nicotiana tabacum HOM05D002592 ORTHO05D003149 7.0e-09 63.5 41 75.6
Peaxi162Scf00207g01136 Petunia axillaris HOM05D002592 ORTHO05D003149 7.0e-09 63.5 41 75.6
CAN.G635.23 Capsicum annuum HOM05D002592 ORTHO05D003149 9.1e-09 63.2 41 73.2
Oeu052811.1 Olea europaea HOM05D002592 ORTHO05D003149 9.1e-09 63.2 41 75.6
TAR626G0998 Trochodendron aralioides HOM05D002592 ORTHO05D003149 9.1e-09 63.2 41 78.0
HPP92_018416 Vanilla planifolia HOM05D002592 ORTHO05D003149 9.1e-09 63.2 41 75.6
Nitab4.5_0018555g0010 Nicotiana tabacum HOM05D002592 ORTHO05D003149 1.6e-08 62.4 41 73.2
Solyc03g121360.1 Solanum lycopersicum HOM05D002592 ORTHO05D003149 1.6e-08 62.4 41 73.2
Sopen03g040170 Solanum pennellii HOM05D002592 ORTHO05D003149 1.6e-08 62.4 41 73.2
PGSC0003DMG400002596 Solanum tuberosum HOM05D002592 ORTHO05D003149 1.6e-08 62.4 41 73.2
Nitab4.5_0004848g0110 Nicotiana tabacum HOM05D002592 ORTHO05D003149 2.0e-08 62.0 41 73.2
Oeu045663.4 Olea europaea HOM05D002592 ORTHO05D003149 2.7e-08 61.6 41 73.2
ECA232G1275 Erigeron canadensis HOM05D002592 ORTHO05D003149 3.5e-08 61.2 41 70.7
Manes.11G029300 Manihot esculenta HOM05D002592 ORTHO05D003149 3.5e-08 61.2 41 70.7
Potri.001G194400 Populus trichocarpa HOM05D002592 ORTHO05D003149 3.5e-08 61.2 41 70.7
Potri.006G158538 Populus trichocarpa HOM05D002592 ORTHO05D003149 3.5e-08 61.2 41 70.7
AL2G32780 Arabidopsis lyrata HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
AT1G73030 Arabidopsis thaliana HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
BcaC03g15439 Brassica carinata HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
C02p30490 Brassica napus HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
BolC2t09100H Brassica oleracea HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
Carub.0001s1746 Capsella rubella HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
Carub.0002s1979 Capsella rubella HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
CAN.G1668.7 Capsicum annuum HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 70.7
CARHR018340 Cardamine hirsuta HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
CARHR066000 Cardamine hirsuta HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
CiPaw.12G009300 Carya illinoinensis HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 70.7
Duzib192G0554 Durio zibethinus HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 70.7
Thhalv10008799m.g Eutrema salsugineum HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
Thhalv10019148m.g Eutrema salsugineum HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 73.2
MD09G1196800 Malus domestica HOM05D002592 ORTHO05D003149 4.5e-08 60.8 41 70.7
Zm00001eb387090 Zea mays HOM05D002592 ORTHO05D003149 4.5e-08 60.8 42 76.2
A02p18410 Brassica napus HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 73.2
BraA02t06880Z Brassica rapa HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 73.2
COL.COLO4_30596 Corchorus olitorius HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 73.2
Duzib235G0801 Durio zibethinus HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 68.3
Peaxi162Scf00038g00126 Petunia axillaris HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 70.7
Sabra01G0135000 Salix brachista HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 70.7
Sabra03G0021500 Salix brachista HOM05D002592 ORTHO05D003149 5.9e-08 60.5 41 70.7
CANSAT64G1782 Cannabis sativa HOM05D002592 ORTHO05D003149 7.7e-08 60.1 41 70.7
Gohir.A06G190100 Gossypium hirsutum HOM05D002592 ORTHO05D003149 7.7e-08 60.1 41 70.7
Gohir.D06G198500 Gossypium hirsutum HOM05D002592 ORTHO05D003149 7.7e-08 60.1 41 70.7
Gorai.010G231400 Gossypium raimondii HOM05D002592 ORTHO05D003149 7.7e-08 60.1 41 70.7
HPP92_016070 Vanilla planifolia HOM05D002592 ORTHO05D003149 7.7e-08 60.1 41 70.7
Aa31LG4G3320 Aethionema arabicum HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 70.7
Aqoxy3G00395 Aquilegia oxysepala HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 73.2
AT1G17730 Arabidopsis thaliana HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 70.7
PSO210G3597 Papaver somniferum HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 73.2
PSO832G2624 Papaver somniferum HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 73.2
SEGI_14657 Sequoiadendron giganteum HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 78.0
Thecc.06G106700 Theobroma cacao HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 68.3
TAR497G0004 Trochodendron aralioides HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 73.2
TAR636G2613 Trochodendron aralioides HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 73.2
vmacro16997 Vaccinium macrocarpon HOM05D002592 ORTHO05D003149 1.0e-07 59.7 41 70.7
Atru.chr1.3622 Acer truncatum HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 70.7
CSS0013352 Camellia sinensis var. sinensis HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 73.2
Cpa.g.sc131.21 Carica papaya HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 68.3
CDE04G2657 Ceratophyllum demersum HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 70.7
Ciclev10026516m.g Citrus clementina HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 68.3
Gohir.A05G133300 Gossypium hirsutum HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 68.3
Gohir.D05G135200 Gossypium hirsutum HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 68.3
Gorai.009G139000 Gossypium raimondii HOM05D002592 ORTHO05D003149 1.3e-07 59.3 43 65.1
Potri.003G045300 Populus trichocarpa HOM05D002592 ORTHO05D003149 1.3e-07 59.3 41 68.3
AagrBONN_evm.TU.Sc2ySwM_362.2683 Anthoceros agrestis HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
AL1G30080 Arabidopsis lyrata HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
arahy.Tifrunner.gnm1.ann1.SB1TJ5 Arachis hypogaea HOM05D002592 ORTHO05D003149 1.7e-07 58.9 43 65.1
BcaB05g24796 Brassica carinata HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
A07p39050 Brassica napus HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
C06p47260 Brassica napus HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
BolC6t39765H Brassica oleracea HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
BraA07t31455Z Brassica rapa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
Cfa019409 Carpinus fangiana HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
CiPaw.11G063500 Carya illinoinensis HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Haze_07835 Corylus avellana HOM05D002592 ORTHO05D003149 1.7e-07 58.9 43 65.1
Dinv37938 Davidia involucrata HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Duzib160G0347 Durio zibethinus HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Migut.I01000 Erythranthe guttata HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FvH4_6g32870 Fragaria vesca HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FAN02G2353 Fragaria x ananassa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FAN03G2581 Fragaria x ananassa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FAN05G5210 Fragaria x ananassa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FAN09G0729 Fragaria x ananassa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
FAN14G4152 Fragaria x ananassa HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Gohir.A10G062500 Gossypium hirsutum HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Gohir.D10G064200 Gossypium hirsutum HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Gorai.011G068200 Gossypium raimondii HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
MD17G1178300 Malus domestica HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
Prupe.3G053300 Prunus persica HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 68.3
PGR102G2722 Punica granatum HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
Rhsim12G0204500 Rhododendron simsii HOM05D002592 ORTHO05D003149 1.7e-07 58.9 41 70.7
Atru.chr1.3620 Acer truncatum HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
Aa31LG7G2560 Aethionema arabicum HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
A07p29990 Brassica napus HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
BolC6t38550H Brassica oleracea HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
BraA07t30637Z Brassica rapa HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
CSS0004778 Camellia sinensis var. sinensis HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
ClCG09G000500 Citrullus lanatus HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 65.9
MELO3C024407.2 Cucumis melo HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 65.9
CsaV3_7G034960 Cucumis sativus L. HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 65.9
HanXRQChr02g0031491 Helianthus annuus HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
Lsat_1_v5_gn_1_36520 Lactuca sativa HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
Lsat_1_v5_gn_6_113321 Lactuca sativa HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
PGR102G0865 Punica granatum HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
Sp5g27990 Schrenkiella parvula HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 70.7
SGA_v2.0_scaffold71G23750 Striga asiatica HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
THA.LOC104812208 Tarenaya hassleriana HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
TWI14G1189 Tripterygium wilfordii HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
TWI59G0167 Tripterygium wilfordii HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
TAR629G3221 Trochodendron aralioides HOM05D002592 ORTHO05D003149 2.3e-07 58.5 41 68.3
Zm00001eb275320 Zea mays HOM05D002592 ORTHO05D034344 2.3e-07 58.5 44 70.5
Actinidia09017 Actinidia chinensis HOM05D002592 ORTHO05D003149 2.9e-07 58.2 41 70.7
Cc04_g02220 Coffea canephora HOM05D002592 ORTHO05D003149 2.9e-07 58.2 41 70.7
Dinv30406 Davidia involucrata HOM05D000617 ORTHO05D000478 2.9e-07 58.2 41 68.3
PSO782G3641 Papaver somniferum HOM05D002592 ORTHO05D003149 2.9e-07 58.2 41 70.7
Sed0005668 Sechium edule HOM05D002592 ORTHO05D003149 2.9e-07 58.2 41 65.9
ATR0789G029 Amborella trichopoda HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 68.3
arahy.Tifrunner.gnm1.ann1.74MAYQ Arachis hypogaea HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
ClCG07G013580 Citrullus lanatus HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 63.4
Glyma.13G352200 Glycine max HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
Glyma.15G022600 Glycine max HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
Hma1.2p1_0388F.1_g142100 Hydrangea macrophylla HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 68.3
Lj5A50T64 Lonicera japonica HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 68.3
Manes.04G137000 Manihot esculenta HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 68.3
Mapoly0084s0027 Marchantia polymorpha HOM05D002592 ORTHO05D003149 3.8e-07 57.8 42 71.4
Phvul.005G161400 Phaseolus vulgaris HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
Sed0010478 Sechium edule HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
VMungo1080G1116 Vigna mungo HOM05D002592 ORTHO05D003149 3.8e-07 57.8 41 65.9
Actinidia39124 Actinidia chinensis HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 68.3
BcaC08g45677 Brassica carinata HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 68.3
C06p34400 Brassica napus HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 68.3
MELO3C013034.2 Cucumis melo HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 63.4
CsaV3_3G044060 Cucumis sativus L. HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 63.4
Lsat_1_v5_gn_4_96201 Lactuca sativa HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 65.9
SalBow6G2297 Salvia bowleyana HOM05D002592 ORTHO05D003149 5.0e-07 57.4 41 65.9
Atru.chr1.3616 Acer truncatum HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 68.3
Aqoxy3G03908 Aquilegia oxysepala HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 68.3
MSTRG.22606 Avicennia marina HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 65.9
PSO063G5644 Papaver somniferum HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 68.3
unitig_0.g2869 Utricularia gibba HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 65.9
vmacro18827 Vaccinium macrocarpon HOM05D002592 ORTHO05D003149 6.6e-07 57.0 41 65.9
Ah.16g102040 Amaranthus hybridus HOM05D002592 ORTHO05D003149 8.6e-07 56.6 42 71.4
CANSAT56G0642 Cannabis sativa HOM05D002592 ORTHO05D003149 8.6e-07 56.6 41 65.9
Lj1g0024696 Lotus japonicus HOM05D002592 ORTHO05D003149 8.6e-07 56.6 41 63.4
Rhsim08G0230600 Rhododendron simsii HOM05D002592 ORTHO05D003149 8.6e-07 56.6 41 65.9
AUR62008961 Chenopodium quinoa HOM05D002592 ORTHO05D003149 1.1e-06 56.2 42 71.4
AUR62014542 Chenopodium quinoa HOM05D002592 ORTHO05D003149 1.1e-06 56.2 42 71.4
Lj9P516T96 Lonicera japonica HOM05D002592 ORTHO05D003149 1.1e-06 56.2 41 65.9
MBI04_g06214_MAGBIO Magnolia biondii HOM05D002592 ORTHO05D003149 1.1e-06 56.2 41 68.3
Nn3g17723 Nelumbo nucifera HOM05D002592 ORTHO05D003149 1.1e-06 56.2 41 65.9
DCAR_016181 Daucus carota HOM05D002592 ORTHO05D003149 1.5e-06 55.8 41 65.9
SGA_v2.0_scaffold45G16990 Striga asiatica HOM05D002592 ORTHO05D003149 1.5e-06 55.8 41 65.9
CDE04G0664 Ceratophyllum demersum HOM05D002592 ORTHO05D003149 1.9e-06 55.5 41 68.3
CDE07G1114 Ceratophyllum demersum HOM05D002592 ORTHO05D003149 1.9e-06 55.5 41 68.3
Nn6g35399 Nelumbo nucifera HOM05D002592 ORTHO05D003149 1.9e-06 55.5 41 65.9
Ca_01181_v3 Cicer arietinum L. HOM05D002592 ORTHO05D003149 2.5e-06 55.1 43 67.4
Mapoly0004s0140 Marchantia polymorpha HOM05D002592 ORTHO05D003149 2.5e-06 55.1 46 65.2
Psat0s2235g0080 Pisum sativum HOM05D002592 ORTHO05D003149 2.5e-06 55.1 43 67.4
Sc11g0008170 Simmondsia chinensis HOM05D002592 ORTHO05D003149 2.5e-06 55.1 42 69.0
TWI14G0861 Tripterygium wilfordii HOM05D002592 ORTHO05D003149 2.5e-06 55.1 41 65.9
Eucgr.F03099 Eucalyptus grandis HOM05D002592 ORTHO05D003149 3.3e-06 54.7 41 65.9
HanXRQChr09g0275481 Helianthus annuus HOM05D002592 ORTHO05D003149 3.3e-06 54.7 41 68.3
Os06g0643300 Oryza sativa ssp. japonica HOM05D002592 ORTHO05D003149 3.3e-06 54.7 43 72.1
Lalb_Chr14g0372911 Lupinus albus HOM05D002592 ORTHO05D003149 4.2e-06 54.3 43 65.1
QL04p077264 Quercus lobata HOM05D002592 ORTHO05D003149 4.2e-06 54.3 43 65.1
EL10Ac2g04611 Beta vulgaris HOM05D002592 ORTHO05D003149 5.5e-06 53.9 42 69.0
EL10Ac9g21138 Beta vulgaris HOM05D002592 ORTHO05D003149 5.5e-06 53.9 41 63.4
AUR62022299 Chenopodium quinoa HOM05D002592 ORTHO05D003149 5.5e-06 53.9 41 63.4
AUR62023893 Chenopodium quinoa HOM05D002592 ORTHO05D003149 5.5e-06 53.9 41 63.4
Nn4g23725 Nelumbo nucifera HOM05D002592 ORTHO05D003149 5.5e-06 53.9 41 63.4
Solyc08g028770.1 Solanum lycopersicum HOM05D002592 ORTHO05D003149 5.5e-06 53.9 41 63.4
Ah.10g037520 Amaranthus hybridus HOM05D002592 ORTHO05D003149 7.2e-06 53.5 42 69.0
RcHm_v2.0_Chr2g0142261 Rosa chinensis HOM05D002592 ORTHO05D003149 7.2e-06 53.5 41 61.0
HPP92_016002 Vanilla planifolia HOM05D002592 ORTHO05D003149 9.5e-06 53.1 41 63.4


User provided reference genes

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