Gene: Carub.0001s1746
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s1746
- Transcript Identifier Carub.0001s1746.1
- Gene Type Coding gene
- Location scaffold_1 : 6135701-6136732 : positive
Gene Family Information
- ID HOM05D002592
- #Genes/#Species 263/98
- Phylogenetic origin
- ID ORTHO05D003149
- #Genes/#Species 241/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0001s1746.v1.1
- pacid 39230295
- synonym Carubv10010323m.g
Descriptions
- Description K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007034 | IEA | InterPro | vacuolar transport | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G17730 |
| GO:0032509 | ISO | PLAZA Integrative Orthology | endosome transport via multivesicular body sorting pathway | AT1G17730 |
| GO:0090351 | ISO | PLAZA Integrative Orthology | seedling development | AT1G17730 |
| GO:0000578 | ISO | PLAZA Integrative Orthology | embryonic axis specification | AT1G17730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G17730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005024 | Snf7 family |
| Mapman id | Description |
|---|---|
| 22.4.1.3.5 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.associated component VPS46/CHMP1 |