Gene: AT1G73030
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G73030
- Transcript Identifier AT1G73030.1
- Gene Type Coding gene
- Location Chr1 : 27473938-27474848 : positive
Gene Family Information
- ID HOM05D002592
- #Genes/#Species 263/98
- Phylogenetic origin
- ID ORTHO05D003149
- #Genes/#Species 241/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G73030.1
- symbol VPS46.2
- uniprot Q9SSM4
Descriptions
- Description SNF7 family protein
- Computational description VPS46.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 46.1 (TAIR:AT1G17730.1); Has 1330 Blast hits to 1329 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 507; Fungi - 292; Plants - 340; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007034 | IEA | GOA Database | vacuolar transport | |
| GO:0007034 | IEA | InterPro | vacuolar transport | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0015031 | IBA | Gene Ontology | protein transport | 1 |
| GO:0032509 | IGI IBA | Gene Ontology | endosome transport via multivesicular body sorting pathway | 1 2 |
| GO:0045324 | IBA | Gene Ontology | late endosome to vacuole transport | 1 |
| GO:0090351 | IGI | Gene Ontology | seedling development | 2 |
| GO:0009793 | IGI | Gene Ontology | embryo development ending in seed dormancy | 2 |
| GO:0000578 | IGI | Gene Ontology | embryonic axis specification | 2 |
| GO:0016192 | ISS | Gene Ontology | vesicle-mediated transport | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005771 | IBA | Gene Ontology | multivesicular body | 1 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005768 | IEA | GOA Database | endosome | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0010008 | IEA | GOA Database | endosome membrane | |
| GO:0000815 | IBA | Gene Ontology | ESCRT III complex | 1 |
| GO:0005739 | HDA | Gene Ontology | mitochondrion | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005024 | Snf7 family |
| Mapman id | Description |
|---|---|
| 22.4.1.3.5 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.associated component VPS46/CHMP1 |