Gene: Sopen03g040170

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g040170
  • Transcript Identifier Sopen03g040170.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 74055604-74056215 : positive

Gene Family Information

  • ID HOM05D002592
  • #Genes/#Species 263/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g040170.1

Descriptions

  • Description Encodes an ESCRT-related protein: CHMP1A/AT1G73030 | CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery | CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein. | vacuolar protein sorting 46.1 (VPS46.1) | CONTAINS InterPro DOMAIN/s: Snf7 | BEST Arabidopsis thaliana protein match is: SNF7 family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007034
IEA
InterProvacuolar transport
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G73030
GO:0032509
ISO
PLAZA Integrative Orthologyendosome transport via multivesicular body sorting pathway AT1G73030
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT1G73030
GO:0000578
ISO
PLAZA Integrative Orthologyembryonic axis specification AT1G73030

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G73030

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005024 Snf7 family
Mapman id Description
22.4.1.3.5 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.associated component VPS46/CHMP1