Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 3.9e-132 474.9 263 100.0
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.6e-130 468.4 263 98.5
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 6.9e-129 464.2 263 97.7
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 2.8e-114 415.6 263 88.2
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.6e-109 399.8 263 85.2
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.2e-103 379.4 248 85.9
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.0e-100 370.5 263 82.5
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 4.5e-88 328.6 264 73.1
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 1.4e-84 317.0 263 68.8
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 2.4e-81 306.2 263 66.5
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 5.9e-80 301.6 264 64.0
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 5.5e-78 295.0 264 66.7
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 3.6e-77 292.4 263 65.8
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 1.4e-76 290.4 262 63.4
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 5.7e-75 285.0 263 65.0
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 9.1e-73 277.7 263 64.3
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.6e-72 276.9 261 62.5
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 2.0e-72 276.6 263 59.7
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 2.7e-72 276.2 262 64.9
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 4.5e-72 275.4 262 62.6
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.0e-71 274.2 262 62.2
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.0e-71 274.2 262 62.2
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.0e-71 274.2 262 62.2
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 2.9e-71 272.7 264 64.0
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.1e-70 270.8 264 63.3
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.5e-70 270.4 262 62.2
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 1.5e-70 270.4 262 62.6
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.5e-70 270.4 264 61.7
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 4.7e-69 265.4 262 61.5
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 4.7e-69 265.4 295 55.3
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 6.1e-69 265.0 262 60.3
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 4.0e-68 262.3 291 55.0
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 6.8e-68 261.5 261 59.0
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.3e-66 257.3 263 60.5
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 6.3e-66 255.0 261 57.9
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.8e-65 253.4 260 58.8
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.8e-65 253.4 261 57.9
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.2e-64 250.8 257 56.4
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 2.0e-64 250.0 262 59.2
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 5.9e-64 248.4 265 61.1
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 5.9e-64 248.4 261 59.4
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 2.3e-63 246.5 261 62.1
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.5e-62 243.0 265 60.0
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 4.3e-62 242.3 263 59.7
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 4.3e-62 242.3 263 58.6
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 7.3e-62 241.5 262 60.7
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.1e-61 240.0 262 60.3
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 2.8e-61 239.6 260 57.7
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 3.6e-61 239.2 262 58.8
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 4.7e-61 238.8 262 58.0
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 1.0e-60 237.7 261 54.0
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.8e-60 236.9 260 57.3
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 3.0e-60 236.1 266 58.6
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.0e-60 236.1 265 58.1
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 4.0e-60 235.7 262 59.2
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 3.4e-59 232.6 260 55.8
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 3.4e-59 232.6 260 55.8
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 9.8e-59 231.1 264 56.1
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 1.7e-58 230.3 303 49.2
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.9e-58 229.6 262 54.6
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 1.1e-57 227.6 262 56.5
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 5.4e-57 225.3 262 56.5
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 9.2e-57 224.6 265 55.1
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 3.5e-56 222.6 262 55.7
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 4.6e-56 222.2 261 54.8
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 6.0e-56 221.9 262 51.1
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 6.0e-56 221.9 273 53.1
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 7.8e-56 221.5 262 55.3
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 6.6e-55 218.4 261 54.0
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.5e-54 217.2 263 56.3
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 1.5e-54 217.2 264 54.2
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.9e-54 216.9 260 55.0
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 3.3e-54 216.1 260 57.3
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 9.5e-54 214.5 263 55.1
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 1.2e-53 214.2 262 54.2
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 4.0e-52 209.1 263 53.6
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 4.0e-52 209.1 264 52.7
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 5.2e-52 208.8 260 55.0
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 1.5e-51 207.2 260 53.5
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.4e-51 206.1 263 54.8
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 4.4e-51 205.7 261 53.3
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.7e-50 203.8 261 54.8
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 4.9e-50 202.2 264 51.9
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.1e-49 201.1 263 54.0
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 9.2e-49 198.0 257 51.0
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 1.6e-48 197.2 261 52.9
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.3e-47 194.1 263 50.2
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.1e-46 191.0 303 47.9
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 2.5e-46 189.9 267 50.6
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 4.9e-42 175.6 271 47.6
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.1e-41 174.5 215 54.0
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.5e-40 169.5 261 44.4
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 8.6e-39 164.9 301 42.5
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 4.0e-36 156.0 266 45.5
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 7.6e-35 151.8 253 41.9
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.9e-33 147.1 288 41.3
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.9e-33 147.1 116 65.5
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.4e-33 145.6 154 61.0
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.7e-31 140.6 217 50.2
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 4.3e-30 136.0 287 38.0
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 2.1e-29 133.7 101 65.3
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.6e-29 132.9 194 47.4
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 1.1e-28 131.3 292 38.7
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.1e-28 129.8 194 46.4
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 4.4e-27 125.9 334 36.8
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.3e-26 124.4 216 46.8
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 4.6e-24 115.9 151 57.0
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 2.3e-23 113.6 70 78.6
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 4.8e-21 105.9 70 70.0
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 3.4e-19 99.8 149 51.7
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 8.4e-18 95.1 215 43.3
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-17 93.6 187 40.6
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.1e-16 90.5 194 39.2
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-14 84.0 152 41.4
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-14 84.0 152 41.4
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 6.2e-13 79.0 261 32.6
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.8e-07 60.8 120 41.7
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 5.1e-07 59.3 56 62.5


User provided reference genes

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