Gene: Sopen01g050660

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g050660
  • Transcript Identifier Sopen01g050660.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 106528426-106532077 : positive

Gene Family Information

  • ID HOM05D006779
  • #Genes/#Species 119/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g050660.1

Descriptions

  • Description C2H2 and C2HC zinc fingers superfamily protein | FUNCTIONS IN: zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, U1-C type , Zinc finger, U1-type , Zinc finger, C2H2-type matrin .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G49590
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT1G49590
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G49590

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G49590
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT1G49590
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT1G49590

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G49590

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041591 OCRE domain
IPR013085 U1-C, C2H2-type zinc finger
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
IPR040023 WW domain-binding protein 4
IPR036236 Zinc finger C2H2 superfamily
Mapman id Description
35.1 not assigned.annotated