Gene: Solyc01g108430.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g108430.3
  • Transcript Identifier Solyc01g108430.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 88076713-88080370 : positive

Gene Family Information

  • ID HOM05D006779
  • #Genes/#Species 119/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g108430.3.1
  • uniprot A0A3Q7EST4
  • gene_id Solyc01g108430

Descriptions

  • Description C2H2 and C2HC zinc fingers superfamily protein (AHRD V3.3 *-* F4I3B1_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G49590
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT1G49590
GO:0008380
IBA
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT1G49590
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT1G49590
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G49590
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G49590
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036236 Zinc finger C2H2 superfamily
IPR040023 WW domain-binding protein 4
IPR041591 OCRE domain
IPR013085 U1-C, C2H2-type zinc finger
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
Mapman id Description
35.1 not assigned.annotated