Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g062700.1 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.7e-82 308.5 147 100.0
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 1.6e-18 96.7 115 48.7
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 3.6e-18 95.5 109 48.6
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 6.1e-18 94.7 105 50.5
Solyc05g014420.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.0e-17 94.0 84 60.7
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 2.3e-17 92.8 105 50.5
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.2e-17 91.7 119 45.4
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.4e-16 88.6 131 42.7
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 1.3e-15 87.0 84 51.2
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.7e-15 86.7 84 53.6
Solyc07g021350.1 Solanum lycopersicum HOM05D002634 ORTHO05D391911 1.7e-15 86.7 43 86.0
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.7e-15 85.5 69 62.3
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 9.2e-14 80.9 84 47.6
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.2e-13 80.5 84 48.8
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.2e-13 80.5 84 48.8
FAN27G3042 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.5e-13 78.6 84 47.6
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.5e-13 78.6 66 57.6
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 4.5e-13 78.6 66 57.6
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.9e-13 78.2 66 57.6
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.9e-13 78.2 66 57.6
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 7.8e-13 77.8 84 47.6
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 7.8e-13 77.8 101 48.5
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 1.0e-12 77.4 66 57.6
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 1.0e-12 77.4 66 56.1
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 1.3e-12 77.0 66 56.1
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 2.3e-12 76.3 66 54.5
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 2.9e-12 75.9 66 54.5
MCO02G223 Micromonas commoda HOM05D002634 ORTHO05D003100 2.9e-12 75.9 64 57.8
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 2.9e-12 75.9 66 54.5
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 3.8e-12 75.5 66 54.5
VMungo1309G3030 Vigna mungo HOM05D002634 ORTHO05D003100 3.8e-12 75.5 66 54.5
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 5.0e-12 75.1 66 53.0
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 5.0e-12 75.1 66 53.0
Phvul.009G068800 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 5.0e-12 75.1 66 53.0
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 5.0e-12 75.1 66 54.5
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 5.0e-12 75.1 66 54.5
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 6.6e-12 74.7 66 53.0
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 6.6e-12 74.7 66 53.0
Solyc07g021360.1 Solanum lycopersicum HOM05D002634 ORTHO05D003100 6.6e-12 74.7 48 72.9
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 8.6e-12 74.3 92 43.5
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 8.6e-12 74.3 66 53.0
Lalb_Chr16g0378751 Lupinus albus HOM05D002634 ORTHO05D003100 8.6e-12 74.3 66 53.0
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 1.1e-11 73.9 66 54.5
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 1.1e-11 73.9 66 54.5
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 1.1e-11 73.9 66 53.0
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 1.1e-11 73.9 66 54.5
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 1.5e-11 73.6 66 51.5
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 1.5e-11 73.6 66 51.5
Glyma.04G043300 Glycine max HOM05D002634 ORTHO05D003100 1.5e-11 73.6 65 53.8
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 1.5e-11 73.6 66 51.5
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 1.5e-11 73.6 65 55.4
Solyc12g049100.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.5e-11 73.6 108 44.4
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 1.5e-11 73.6 66 54.5
EL10As7g23823 Beta vulgaris HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 51.5
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 53.0
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 54.5
SGA_v2.0_scaffold102G29893 Striga asiatica HOM05D002634 ORTHO05D003100 1.9e-11 73.2 69 49.3
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 51.5
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 54.5
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 53.0
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 1.9e-11 73.2 66 53.0
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 2.5e-11 72.8 66 53.0
EL10Ac6g15682 Beta vulgaris HOM05D002634 ORTHO05D003100 2.5e-11 72.8 66 53.0
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 2.5e-11 72.8 66 53.0
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 2.5e-11 72.8 66 53.0
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 3.3e-11 72.4 66 50.0
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 3.3e-11 72.4 66 51.5
Lalb_Chr05g0226131 Lupinus albus HOM05D002634 ORTHO05D003100 4.3e-11 72.0 69 49.3
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 4.3e-11 72.0 66 51.5
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 5.6e-11 71.6 66 51.5
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 5.6e-11 71.6 66 51.5
TAR376G0230 Trochodendron aralioides HOM05D002634 ORTHO05D003100 5.6e-11 71.6 66 51.5
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 5.6e-11 71.6 97 39.2
Os07g0405100 Oryza sativa ssp. japonica HOM05D002634 ORTHO05D003100 7.3e-11 71.2 66 51.5
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 53.0
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 53.0
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 51.5
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 51.5
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 51.5
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 50.0
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 51.5
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 50.0
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 9.5e-11 70.9 66 50.0
Eucgr.I00742 Eucalyptus grandis HOM05D002634 ORTHO05D003100 1.2e-10 70.5 66 51.5
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 1.2e-10 70.5 105 39.0
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 1.2e-10 70.5 66 50.0
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 1.2e-10 70.5 66 50.0
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 1.6e-10 70.1 65 52.3
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 1.6e-10 70.1 66 50.0
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 1.6e-10 70.1 66 50.0
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 1.6e-10 70.1 66 51.5
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 51.5
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 50.0
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.1e-10 69.7 84 46.4
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 50.0
PSO170G2848 Papaver somniferum HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 48.5
PSO210G0654 Papaver somniferum HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 48.5
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 2.1e-10 69.7 66 50.0
CARHR280290 Cardamine hirsuta HOM05D002634 ORTHO05D003100 2.8e-10 69.3 66 53.0
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 2.8e-10 69.3 66 50.0
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 2.8e-10 69.3 65 50.8
SEGI_04363 Sequoiadendron giganteum HOM05D002634 ORTHO05D003100 2.8e-10 69.3 66 50.0
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 3.6e-10 68.9 66 48.5
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 3.6e-10 68.9 66 50.0
BcaC06g34819 Brassica carinata HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 51.5
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 50.0
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 51.5
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 48.5
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 50.0
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 4.7e-10 68.6 66 50.0
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 4.7e-10 68.6 69 53.6
PGSC0003DMG400042597 Solanum tuberosum HOM05D002634 ORTHO05D003100 4.7e-10 68.6 65 56.9
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
Lj2g0012944 Lotus japonicus HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 48.5
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 47.0
PGSC0003DMG400043199 Solanum tuberosum HOM05D002634 ORTHO05D003100 6.1e-10 68.2 104 41.3
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 6.1e-10 68.2 66 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1119 Anthoceros agrestis HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 48.5
MSTRG.25062 Avicennia marina HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 48.5
Carub.0008s2717 Capsella rubella HOM05D002634 ORTHO05D003100 8.0e-10 67.8 65 52.3
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 51.5
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 51.5
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 50.0
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 48.5
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 8.0e-10 67.8 65 52.3
THA.LOC104819248 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 50.0
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 8.0e-10 67.8 66 48.5
CBR_g32362 Chara braunii HOM05D002634 ORTHO05D003100 1.0e-09 67.4 66 48.5
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.0e-09 67.4 65 50.8
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-09 67.0 66 51.5
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-09 67.0 66 51.5
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 1.4e-09 67.0 66 47.0
TPR.G23895 Trifolium pratense HOM05D002634 ORTHO05D003100 1.4e-09 67.0 66 48.5
AT5G67320 Arabidopsis thaliana HOM05D002634 ORTHO05D003100 1.8e-09 66.6 65 50.8
Duzib147G0499 Durio zibethinus HOM05D002634 ORTHO05D003100 1.8e-09 66.6 98 38.8
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.8e-09 66.6 66 47.0
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 2.3e-09 66.2 65 50.8
CiPaw.16G035100 Carya illinoinensis HOM05D002634 ORTHO05D003100 2.3e-09 66.2 66 47.0
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 2.3e-09 66.2 66 47.0
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 2.3e-09 66.2 66 48.5
unitig_22.g6760 Utricularia gibba HOM05D002634 ORTHO05D003100 2.3e-09 66.2 84 44.0
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
A09p09440 Brassica napus HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
BraA09t36593Z Brassica rapa HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
Medtr4g095058 Medicago truncatula HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 4.0e-09 65.5 66 48.5
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 5.2e-09 65.1 66 45.5
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 6.8e-09 64.7 65 47.7
FAN24G2212 Fragaria x ananassa HOM05D002634 ORTHO05D003100 6.8e-09 64.7 65 47.7
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 8.9e-09 64.3 66 47.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.2e-08 63.9 66 47.0
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 1.2e-08 63.9 66 48.5
Glyma.11G051700 Glycine max HOM05D002634 ORTHO05D003100 1.5e-08 63.5 66 48.5
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 1.5e-08 63.5 66 47.0
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.5e-08 63.5 66 47.0
Psat2g169320 Pisum sativum HOM05D002634 ORTHO05D003100 1.5e-08 63.5 66 47.0
Medtr5g016370 Medicago truncatula HOM05D002634 ORTHO05D003100 2.0e-08 63.2 66 48.5
Phvul.002G014600 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 2.6e-08 62.8 66 48.5
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 3.4e-08 62.4 66 47.0
Actinidia21249 Actinidia chinensis HOM05D002634 ORTHO05D003100 4.4e-08 62.0 63 50.8
CANSAT25G1395 Cannabis sativa HOM05D002634 ORTHO05D003100 4.4e-08 62.0 64 46.9
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 4.4e-08 62.0 66 48.5
Aa31LG1G15870 Aethionema arabicum HOM05D002634 ORTHO05D003100 5.8e-08 61.6 66 47.0
CANSAT25G0169 Cannabis sativa HOM05D002634 ORTHO05D003100 5.8e-08 61.6 66 47.0
FAN20G1488 Fragaria x ananassa HOM05D002634 ORTHO05D003100 5.8e-08 61.6 65 46.2
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 9.8e-08 60.8 66 43.9
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 3.7e-07 58.9 48 56.2
Medtr5g016350 Medicago truncatula HOM05D002634 ORTHO05D003100 3.7e-07 58.9 66 43.9
PSO541G4236 Papaver somniferum HOM05D002634 ORTHO05D003100 4.1e-06 55.5 54 48.1


User provided reference genes

Program Settings