Gene: Solyc04g078320.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g078320.4
  • Transcript Identifier Solyc04g078320.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 61055053-61065367 : negative

Gene Family Information

  • ID HOM05D002634
  • #Genes/#Species 260/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g078320.4.1
  • uniprot A0A3Q7H1T4
  • gene_id Solyc04g078320

Descriptions

  • Description F-box-like/WD repeat-containing protein TBL1XR1-A (AHRD V3.3 *** A0A2G3CPV9_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045892
IEA
GOA Databasenegative regulation of transcription, DNA-templated
GO:0016575
IBA
GOA Databasehistone deacetylation
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G67320

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003714
IBA
GOA Databasetranscription corepressor activity
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT5G67320

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000118
IBA
GOA Databasehistone deacetylase complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G67320

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006594 LIS1 homology motif
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
Mapman id Description
12.3.2.1.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.component HOS15