Gene: Sopen12g030510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g030510
  • Transcript Identifier Sopen12g030510.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 79693271-79696782 : negative

Gene Family Information

  • ID HOM05D002634
  • #Genes/#Species 260/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g030510.1

Descriptions

  • Description Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. | high expression of osmotically responsive genes 15 (HOS15) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , LisH dimerisation motif, subgroup , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , LisH dimerisation motif , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: TBP-associated factor 5
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G67320
GO:0016575
ISO
PLAZA Integrative Orthologyhistone deacetylation AT5G67320

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT5G67320

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G67320

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006594 LIS1 homology motif
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR020472 G-protein beta WD-40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
12.3.2.1.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.component HOS15