Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090890.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 5.6e-83 310.8 150 100.0
CAN.G524.10 Capsicum annuum HOM05D004511 ORTHO05D005348 7.6e-40 167.5 108 76.9
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 9.6e-35 150.6 98 77.6
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 2.8e-34 149.1 98 76.5
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.4e-33 146.7 98 73.5
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 4.0e-33 145.2 98 72.4
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 1.2e-32 143.7 98 72.4
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 6.4e-31 137.9 98 71.4
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 8.4e-31 137.5 98 70.4
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.9e-30 136.3 98 67.3
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 5.5e-30 134.8 98 66.3
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 9.3e-30 134.0 98 68.4
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 1.6e-29 133.3 98 66.3
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 1.6e-29 133.3 98 67.3
vmacro08562 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 1.6e-29 133.3 98 69.4
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
CSS0015875 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 70.4
CSS0022858 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 70.4
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 68.4
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 66.3
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 2.1e-29 132.9 98 68.4
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 2.7e-29 132.5 98 68.4
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 4.6e-29 131.7 98 65.3
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 4.6e-29 131.7 98 65.3
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 4.6e-29 131.7 98 65.3
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 4.6e-29 131.7 98 69.4
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 6.0e-29 131.3 98 65.3
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 6.0e-29 131.3 98 69.4
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 6.0e-29 131.3 98 68.4
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 1.0e-28 130.6 98 67.3
Sopen09g033860 Solanum pennellii HOM05D004511 ORTHO05D005348 1.0e-28 130.6 68 92.6
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 1.3e-28 130.2 98 64.3
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 1.8e-28 129.8 98 66.3
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 1.8e-28 129.8 98 66.3
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 2.3e-28 129.4 98 65.3
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 3.0e-28 129.0 98 66.3
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 3.0e-28 129.0 98 66.3
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 3.9e-28 128.6 98 66.3
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 3.9e-28 128.6 98 66.3
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 3.9e-28 128.6 98 67.3
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 5.1e-28 128.3 98 68.4
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 5.1e-28 128.3 98 65.3
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 6.7e-28 127.9 98 65.3
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 6.7e-28 127.9 98 67.3
Hund00489 Selenicereus undatus HOM05D004511 ORTHO05D005348 6.7e-28 127.9 104 62.5
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 8.7e-28 127.5 98 67.3
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 1.1e-27 127.1 98 64.3
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 1.1e-27 127.1 98 68.4
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 1.5e-27 126.7 98 67.3
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 1.5e-27 126.7 98 67.3
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 1.9e-27 126.3 98 64.3
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 1.9e-27 126.3 98 66.3
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 2.5e-27 125.9 98 66.3
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 2.5e-27 125.9 98 66.3
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 2.5e-27 125.9 98 65.3
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 3.3e-27 125.6 98 65.3
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 3.3e-27 125.6 98 65.3
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 3.3e-27 125.6 98 65.3
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 3.3e-27 125.6 98 67.3
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 4.3e-27 125.2 98 65.3
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 4.3e-27 125.2 98 64.3
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 5.6e-27 124.8 98 65.3
Lj6A637T63 Lonicera japonica HOM05D004511 ORTHO05D005348 5.6e-27 124.8 92 68.5
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 5.6e-27 124.8 98 62.2
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 1.3e-26 123.6 98 66.3
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 1.3e-26 123.6 98 66.3
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 2.1e-26 122.9 98 64.3
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 2.1e-26 122.9 98 63.3
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 2.1e-26 122.9 98 66.3
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.1e-26 122.9 98 66.3
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 2.1e-26 122.9 98 66.3
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 2.8e-26 122.5 98 63.3
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 4.8e-26 121.7 98 63.3
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 1.1e-25 120.6 98 63.3
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 3.1e-25 119.0 98 62.2
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 3.1e-25 119.0 98 65.3
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 6.9e-25 117.9 98 60.2
CDE08G1197 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 7.6e-24 114.4 66 78.8
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.0e-23 114.0 98 61.2
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 1.0e-23 114.0 98 61.2
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 1.7e-23 113.2 98 58.2
SHI00812 Sapria himalayana HOM05D004511 ORTHO05D005348 4.9e-23 111.7 99 58.6
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 8.4e-23 110.9 98 59.2
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 2.5e-22 109.4 98 57.1
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 2.7e-21 105.9 98 56.1
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 3.5e-21 105.5 99 51.5
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 1.5e-19 100.1 98 51.0
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 1.1e-17 94.0 98 56.1
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.1e-17 94.0 54 81.5
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 4.1e-17 92.0 97 50.5
CBR_g22304 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-16 88.6 66 59.1
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 5.9e-16 88.2 97 44.3
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 1.4e-14 83.6 78 57.7
Hund00476 Selenicereus undatus HOM05D004511 ORTHO05D005348 7.9e-13 77.8 74 58.1
Atru.chr4.2015 Acer truncatum HOM05D004511 ORTHO05D005348 5.1e-12 75.1 37 89.2
Manes.03G157900 Manihot esculenta HOM05D004511 ORTHO05D005348 2.5e-11 72.8 74 56.8
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.5e-08 63.5 35 77.1
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.5e-08 63.5 48 68.8
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.4e-08 62.4 31 83.9
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 7.7e-08 61.2 35 74.3
Ca_21499_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 6.5e-07 58.2 35 71.4
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 8.5e-07 57.8 62 41.9
VMungo0720G0419 Vigna mungo HOM05D004511 ORTHO05D005348 1.9e-06 56.6 36 61.1


User provided reference genes

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