Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065940.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 1.5e-68 262.7 134 100.0
Solyc01g099740.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 4.3e-18 95.1 44 100.0
Sopen01g043260 Solanum pennellii HOM05D002199 ORTHO05D004947 4.3e-18 95.1 44 100.0
Sopen09g027730 Solanum pennellii HOM05D002199 ORTHO05D004947 4.3e-18 95.1 44 100.0
CAN.G1459.13 Capsicum annuum HOM05D002199 ORTHO05D004947 2.1e-17 92.8 44 97.7
PGR044G2002 Punica granatum HOM05D002199 ORTHO05D004947 2.1e-17 92.8 44 97.7
SHI15194 Sapria himalayana HOM05D002199 ORTHO05D004947 6.2e-17 91.3 56 82.1
Peaxi162Scf00037g01217 Petunia axillaris HOM05D002199 ORTHO05D004947 8.1e-17 90.9 54 83.3
Thecc.01G298300 Theobroma cacao HOM05D002199 ORTHO05D004947 2.3e-16 89.4 48 91.7
Gohir.A08G042600 Gossypium hirsutum HOM05D002199 ORTHO05D004947 3.1e-16 89.0 48 91.7
Nitab4.5_0003844g0070 Nicotiana tabacum HOM05D001134 ORTHO05D001035 3.1e-16 89.0 42 97.6
Lj1g0003572 Lotus japonicus HOM05D002199 ORTHO05D004947 4.0e-16 88.6 53 84.9
arahy.Tifrunner.gnm1.ann1.46M2KL Arachis hypogaea HOM05D002199 ORTHO05D004947 5.2e-16 88.2 44 97.7
arahy.Tifrunner.gnm1.ann1.BKDY12 Arachis hypogaea HOM05D002199 ORTHO05D004947 5.2e-16 88.2 44 97.7
Prupe.8G259300 Prunus persica HOM05D002199 ORTHO05D004947 5.2e-16 88.2 45 95.6
Lalb_Chr21g0306811 Lupinus albus HOM05D002199 ORTHO05D004947 8.9e-16 87.4 45 95.6
Atru.chr5.2688 Acer truncatum HOM05D002199 ORTHO05D004947 1.2e-15 87.0 45 93.3
MSTRG.21624 Avicennia marina HOM05D002199 ORTHO05D004947 1.2e-15 87.0 48 89.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.2e-15 87.0 42 95.2
HanXRQChr09g0248151 Helianthus annuus HOM05D002199 ORTHO05D004947 2.0e-15 86.3 53 81.1
Lalb_Chr02g0143231 Lupinus albus HOM05D002199 ORTHO05D004947 2.6e-15 85.9 45 93.3
MSTRG.16392 Avicennia marina HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
CSS0007987 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
CSS0020039 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
CSS0029265 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
CANSAT25G1293 Cannabis sativa HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
CANSAT25G3340 Cannabis sativa HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Cpa.g.sc9.221 Carica papaya HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Ciclev10002769m.g Citrus clementina HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Ciclev10022685m.g Citrus clementina HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Cc02_g34160 Coffea canephora HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
COL.COLO4_23366 Corchorus olitorius HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Dinv19707 Davidia involucrata HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Duzib211G0610 Durio zibethinus HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Glyma.03G213600 Glycine max HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Glyma.19G210402 Glycine max HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Gohir.A12G131300 Gossypium hirsutum HOM05D002199 ORTHO05D004947 4.4e-15 85.1 49 85.7
Gohir.D08G052400 Gossypium hirsutum HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Gohir.D12G135200 Gossypium hirsutum HOM05D002199 ORTHO05D004947 4.4e-15 85.1 49 85.7
Gorai.004G052500 Gossypium raimondii HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Gorai.008G146200 Gossypium raimondii HOM05D002199 ORTHO05D004947 4.4e-15 85.1 49 85.7
Hma1.2p1_1292F.1_g273770 Hydrangea macrophylla HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Nn3g21455 Nelumbo nucifera HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Nn4g25821 Nelumbo nucifera HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Nitab4.5_0003181g0010 Nicotiana tabacum HOM05D002199 ORTHO05D004947 4.4e-15 85.1 45 91.1
QL12p026659 Quercus lobata HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
QL12p027276 Quercus lobata HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 4.4e-15 85.1 40 97.5
Sed0020542 Sechium edule HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
Sed0021569 Sechium edule HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.4e-15 85.1 40 97.5
unitig_0.g657 Utricularia gibba HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
VMungo0720G1966 Vigna mungo HOM05D002199 ORTHO05D004947 4.4e-15 85.1 40 97.5
HanXRQChr03g0074701 Helianthus annuus HOM05D002199 ORTHO05D004947 5.8e-15 84.7 45 91.1
Manes.09G170401 Manihot esculenta HOM05D002199 ORTHO05D004947 5.8e-15 84.7 44 95.5
Ca_09150_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Glyma.02G155300 Glycine max HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Glyma.10G019100 Glycine max HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Lalb_Chr06g0163431 Lupinus albus HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Phvul.007G144000 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Psat3g021920 Pisum sativum HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Psat6g165920 Pisum sativum HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Sc05g0004040 Simmondsia chinensis HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
TPR.G34004 Trifolium pratense HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
TPR.G9614 Trifolium pratense HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
TAR455G0001 Trochodendron aralioides HOM05D002199 ORTHO05D004947 7.6e-15 84.3 40 97.5
Dinv40337 Davidia involucrata HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Duzib133G1030 Durio zibethinus HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Migut.D00203 Erythranthe guttata HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
MD03G1286000 Malus domestica HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
MD11G1305900 Malus domestica HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Manes.05G063400 Manihot esculenta HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Oeu054128.1 Olea europaea HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Phvul.001G206200 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
TWI14G0261 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
TAR362G0065 Trochodendron aralioides HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
GSVIVG01027986001 Vitis vinifera HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
GSVIVG01031139001 Vitis vinifera HOM05D002199 ORTHO05D004947 9.9e-15 84.0 40 95.0
Actinidia24830 Actinidia chinensis HOM05D002199 ORTHO05D004947 1.3e-14 83.6 40 95.0
CiPaw.08G096800 Carya illinoinensis HOM05D002199 ORTHO05D004947 1.3e-14 83.6 56 75.0
Eucgr.K03467 Eucalyptus grandis HOM05D002199 ORTHO05D004947 1.3e-14 83.6 48 87.5
Zm00001eb127790 Zea mays HOM05D002199 ORTHO05D004947 1.3e-14 83.6 53 84.9
Zm00001eb333500 Zea mays HOM05D002199 ORTHO05D004947 1.3e-14 83.6 53 84.9
ClCG09G010120 Citrullus lanatus HOM05D002199 ORTHO05D004947 1.7e-14 83.2 49 83.7
Lj5g0015534 Lotus japonicus HOM05D002199 ORTHO05D004947 1.7e-14 83.2 40 95.0
Potri.014G130700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.7e-14 83.2 39 97.4
Atru.chr5.1170 Acer truncatum HOM05D002199 ORTHO05D004947 2.2e-14 82.8 40 95.0
Potri.002G205700 Populus trichocarpa HOM05D002199 ORTHO05D004947 2.2e-14 82.8 40 95.0
Rhsim01G0284100 Rhododendron simsii HOM05D002199 ORTHO05D004947 2.2e-14 82.8 40 95.0
vmacro14997 Vaccinium macrocarpon HOM05D002199 ORTHO05D004947 2.2e-14 82.8 40 95.0
Actinidia32227 Actinidia chinensis HOM05D002199 ORTHO05D004947 2.9e-14 82.4 40 95.0
Os01g0256900 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D004947 2.9e-14 82.4 46 91.3
Hund05416 Selenicereus undatus HOM05D002199 ORTHO05D004947 2.9e-14 82.4 59 71.2
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.9e-14 82.4 40 92.5
AagrBONN_evm.TU.Sc2ySwM_228.5267 Anthoceros agrestis HOM05D002199 ORTHO05D004947 3.7e-14 82.0 109 50.5
Manes.01G217600 Manihot esculenta HOM05D002199 ORTHO05D004947 3.7e-14 82.0 40 92.5
Nitab4.5_0003917g0030 Nicotiana tabacum HOM05D002199 ORTHO05D004947 3.7e-14 82.0 40 92.5
FvH4_2g25520 Fragaria vesca HOM05D002199 ORTHO05D004947 4.9e-14 81.6 53 81.1
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 4.9e-14 81.6 53 81.1
FAN24G1953 Fragaria x ananassa HOM05D002199 ORTHO05D004947 4.9e-14 81.6 53 81.1
RcHm_v2.0_Chr6g0293731 Rosa chinensis HOM05D002199 ORTHO05D004947 4.9e-14 81.6 53 81.1
Sabra02G0153600 Salix brachista HOM05D002199 ORTHO05D004947 4.9e-14 81.6 40 92.5
Ca_10348_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 6.4e-14 81.3 57 75.4
MELO3C018097.2 Cucumis melo HOM05D002199 ORTHO05D004947 6.4e-14 81.3 40 95.0
CsaV3_4G030890 Cucumis sativus L. HOM05D002199 ORTHO05D004947 6.4e-14 81.3 40 95.0
CsaV3_7G024630 Cucumis sativus L. HOM05D002199 ORTHO05D004947 6.4e-14 81.3 40 95.0
Thhalv10021732m.g Eutrema salsugineum HOM05D002199 ORTHO05D004947 6.4e-14 81.3 46 91.3
QL03p020177 Quercus lobata HOM05D002199 ORTHO05D004947 6.4e-14 81.3 40 90.0
Sp3g04360 Schrenkiella parvula HOM05D002199 ORTHO05D004947 6.4e-14 81.3 46 91.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 8.4e-14 80.9 42 92.9
ATR0796G324 Amborella trichopoda HOM05D002199 ORTHO05D004947 1.1e-13 80.5 41 95.1
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 1.1e-13 80.5 41 95.1
MBI18_g08110_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 1.1e-13 80.5 61 70.5
MBI19_g09229_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 1.1e-13 80.5 41 95.1
PSO170G1601 Papaver somniferum HOM05D002199 ORTHO05D004947 1.1e-13 80.5 41 95.1
PSO210G6647 Papaver somniferum HOM05D002199 ORTHO05D004947 1.1e-13 80.5 41 95.1
Aqoxy2G02974 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.9e-13 79.7 41 95.1
CARHR186240 Cardamine hirsuta HOM05D002199 ORTHO05D004947 1.9e-13 79.7 45 91.1
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.9e-13 79.7 128 49.2
Aqoxy5G00738 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 2.4e-13 79.3 41 92.7
THA.LOC104821724 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 2.4e-13 79.3 51 84.3
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 3.2e-13 79.0 40 90.0
AL6G39230 Arabidopsis lyrata HOM05D002199 ORTHO05D004947 4.1e-13 78.6 48 87.5
HPP92_006923 Vanilla planifolia HOM05D002199 ORTHO05D004947 4.1e-13 78.6 41 92.7
PGSC0003DMG400024713 Solanum tuberosum HOM05D001134 ORTHO05D001035 5.4e-13 78.2 77 57.1
EL10Ac7g17474 Beta vulgaris HOM05D002199 ORTHO05D004947 7.1e-13 77.8 59 71.2
Medtr7g108700 Medicago truncatula HOM05D002199 ORTHO05D004947 7.1e-13 77.8 40 95.0
Medtr8g058420 Medicago truncatula HOM05D002199 ORTHO05D004947 7.1e-13 77.8 40 95.0
Medtr8g058537 Medicago truncatula HOM05D002199 ORTHO05D004947 7.1e-13 77.8 40 95.0
Medtr8g091620 Medicago truncatula HOM05D002199 ORTHO05D004947 7.1e-13 77.8 40 95.0
AT5G27720 Arabidopsis thaliana HOM05D002199 ORTHO05D004947 9.2e-13 77.4 48 85.4
Carub.0006s2485 Capsella rubella HOM05D002199 ORTHO05D004947 9.2e-13 77.4 44 90.9
Oeu048345.1 Olea europaea HOM05D002199 ORTHO05D004947 9.2e-13 77.4 40 92.5
TWI59G0539 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 9.2e-13 77.4 40 92.5
AUR62008655 Chenopodium quinoa HOM05D002199 ORTHO05D004947 1.2e-12 77.0 59 71.2
AUR62033113 Chenopodium quinoa HOM05D002199 ORTHO05D004947 1.2e-12 77.0 59 71.2
BcaB04g19685 Brassica carinata HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
BcaC04g23643 Brassica carinata HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
A06p37360 Brassica napus HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
A09p05420 Brassica napus HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
C07p41100 Brassica napus HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
C09p05900 Brassica napus HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.6e-12 76.6 44 90.9
BolC7t44637H Brassica oleracea HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
BolC9t53516H Brassica oleracea HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
BraA06t26659Z Brassica rapa HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
BraA09t36180Z Brassica rapa HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
Pp3c14_11180 Physcomitrium patens HOM05D002199 ORTHO05D004947 1.6e-12 76.6 43 86.0
Sp2g20890 Schrenkiella parvula HOM05D002199 ORTHO05D004947 1.6e-12 76.6 40 92.5
CiPaw.07G107000 Carya illinoinensis HOM05D002199 ORTHO05D004947 2.1e-12 76.3 40 90.0
THA.LOC104818719 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 2.7e-12 75.9 57 70.2
ECA248G3217 Erigeron canadensis HOM05D002199 ORTHO05D004947 7.8e-12 74.3 44 88.6
Lsat_1_v5_gn_5_190620 Lactuca sativa HOM05D002199 ORTHO05D004947 1.0e-11 73.9 40 85.0
Actinidia21055 Actinidia chinensis HOM05D000147 ORTHO05D001254 3.9e-11 72.0 35 94.3
Aa31LG5G15860 Aethionema arabicum HOM05D002199 ORTHO05D004947 6.6e-11 71.2 43 86.0
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 6.6e-11 71.2 69 62.3
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 6.6e-11 71.2 69 62.3
CBR_g29529 Chara braunii HOM05D002199 ORTHO05D004947 1.1e-10 70.5 42 76.2
Mapoly0002s0139 Marchantia polymorpha HOM05D002199 ORTHO05D004947 1.5e-10 70.1 52 73.1
Haze_04137 Corylus avellana HOM05D001134 ORTHO05D001035 1.6e-09 66.6 80 51.2
Cre06.g251300 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D004947 3.1e-08 62.4 44 70.5
CARHR196040 Cardamine hirsuta HOM05D002199 ORTHO05D004947 2.6e-07 59.3 46 67.4
MCO07G033 Micromonas commoda HOM05D002199 ORTHO05D004947 2.2e-06 56.2 44 63.6


User provided reference genes

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