Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.8e-223 777.3 414 100.0
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.9e-205 719.2 414 93.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.7e-203 712.6 414 91.5
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.3e-201 706.4 417 90.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.6e-172 609.8 414 77.5
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 6.7e-171 604.4 413 77.7
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.4e-165 586.6 415 76.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.2e-165 585.5 418 77.5
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.2e-164 583.6 413 75.5
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.4e-163 580.1 422 76.1
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 2.6e-162 575.9 415 76.1
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 7.0e-160 567.8 413 75.8
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 4.5e-159 565.1 414 73.9
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 5.9e-159 564.7 421 74.8
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.9e-158 562.4 396 77.3
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.9e-158 562.4 421 74.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 8.5e-158 560.8 417 74.1
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.5e-157 560.1 418 73.4
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.9e-157 559.7 415 73.3
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.2e-157 558.9 418 74.2
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.6e-156 556.6 413 74.3
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.7e-156 555.1 415 73.0
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.1e-156 554.7 422 72.5
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.0e-155 553.9 414 74.6
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.4e-155 553.5 416 73.3
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.8e-155 553.1 414 73.7
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-155 553.1 415 74.0
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.7e-155 551.2 415 73.7
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 6.7e-155 551.2 416 73.1
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.8e-155 550.8 415 73.7
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.1e-154 550.4 414 72.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.6e-154 549.3 415 73.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 9.7e-154 547.4 416 71.2
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.3e-153 547.0 415 74.7
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.1e-152 543.9 422 71.8
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.1e-152 542.0 421 72.4
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.3e-152 541.6 417 72.4
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 5.3e-152 541.6 421 72.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 7.0e-152 541.2 423 71.6
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.6e-151 540.0 423 71.4
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.5e-151 538.5 416 73.1
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-150 537.0 423 71.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.3e-150 537.0 416 70.4
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.2e-150 536.2 420 71.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 2.9e-150 535.8 412 72.1
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 3.8e-150 535.4 416 71.2
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 3.8e-150 535.4 414 71.5
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 8.5e-150 534.3 414 72.0
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 8.5e-150 534.3 415 71.6
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.7e-148 529.3 415 71.3
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 6.1e-148 528.1 419 70.4
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.0e-147 527.3 421 70.1
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.4e-147 526.9 397 72.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.8e-147 526.6 413 69.0
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 6.8e-147 524.6 413 71.4
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.5e-146 523.5 423 70.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.5e-146 523.5 418 70.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 7.5e-146 521.2 419 69.9
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.4e-144 516.9 417 68.8
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.2e-143 513.8 417 70.7
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 2.9e-142 509.2 395 71.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.9e-142 509.2 422 67.1
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.5e-142 507.7 418 68.2
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.0e-139 499.2 419 68.3
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 6.8e-139 498.0 422 66.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.3e-137 493.8 418 66.3
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.7e-137 493.4 417 65.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.3e-137 491.1 419 66.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.8e-136 490.0 417 65.5
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.2e-135 487.3 336 76.8
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.7e-135 486.1 418 66.7
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.7e-135 486.1 437 65.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 8.6e-134 481.1 411 64.5
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 8.6e-134 481.1 329 77.5
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.1e-133 480.7 423 65.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.5e-133 480.3 427 65.3
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.3e-133 479.2 417 64.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 4.3e-133 478.8 414 65.0
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.6e-132 475.7 394 68.0
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.6e-132 475.7 411 63.7
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.0e-131 474.2 414 65.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 3.0e-131 472.6 417 64.5
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.0e-131 472.2 326 77.9
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.5e-130 470.3 440 61.8
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.0e-130 469.9 322 77.6
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.7e-129 466.8 420 61.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.4e-128 463.8 412 62.1
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.4e-128 463.8 417 62.8
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 3.2e-128 462.6 348 72.7
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 4.1e-128 462.2 416 62.7
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 4.1e-128 462.2 417 63.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 7.0e-128 461.5 388 64.7
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.6e-127 460.3 420 61.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.7e-127 459.5 329 74.8
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 2.7e-127 459.5 329 74.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.7e-126 456.8 348 71.8
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.3e-126 456.4 322 76.1
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.3e-125 452.2 443 60.0
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.1e-124 449.9 419 61.6
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 4.0e-123 445.7 398 63.6
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 7.0e-120 434.9 413 62.2
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.8e-115 420.2 400 61.0
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 3.2e-112 409.5 398 58.5
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.6e-110 401.7 416 59.9
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.2e-107 392.1 377 57.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 6.4e-105 385.2 218 89.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.6e-103 380.6 377 56.0
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 9.6e-101 371.3 415 52.8
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.4e-99 366.7 430 54.4
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.5e-98 364.0 281 72.6
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.8e-97 359.4 447 50.6
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 5.3e-91 339.0 443 47.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.0e-90 337.0 290 64.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 9.3e-88 328.2 352 57.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.7e-87 326.6 340 58.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.6e-87 325.9 371 55.8
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.6e-77 291.6 168 85.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 3.1e-75 286.6 153 92.2
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 2.2e-73 280.4 283 60.1
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 3.2e-72 276.6 339 52.5
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-60 238.0 137 88.3
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.8e-60 236.1 156 75.0
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 1.8e-54 217.6 114 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 5.7e-53 212.6 167 65.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.0e-50 204.1 263 52.5
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 8.5e-49 198.7 116 85.3
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-46 191.4 120 80.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-43 181.8 159 60.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.2e-42 178.3 283 44.2
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 8.0e-39 165.6 182 56.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.0e-38 165.2 156 50.6
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.0e-34 151.0 420 32.9
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.1e-31 141.0 162 58.0
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 9.8e-29 132.1 141 59.6
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.1e-27 128.6 116 59.5
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.5e-26 123.2 64 90.6
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 7.7e-26 122.5 72 83.3
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.5e-25 119.4 64 87.5
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.2e-24 116.7 97 63.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 5.5e-24 116.3 68 83.8
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 7.2e-24 115.9 156 44.9
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.6e-23 113.6 68 82.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 4.7e-23 113.2 66 83.3
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 9.2e-19 99.0 108 52.8
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 2.7e-10 70.9 49 77.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6


User provided reference genes

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