Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.2e-272 942.6 477 100.0
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 2.8e-269 931.4 477 98.3
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 5.3e-236 820.8 453 93.4
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.7e-208 728.8 477 78.8
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 7.9e-208 727.2 522 75.3
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.3e-202 709.9 502 74.1
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 2.3e-199 699.1 389 90.0
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 2.0e-171 606.3 456 68.6
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.0e-170 604.0 450 68.2
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.2e-168 597.0 515 61.7
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.4e-166 588.6 456 64.7
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.6e-163 580.1 441 65.8
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 5.9e-163 578.2 482 62.4
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 5.9e-163 578.2 478 62.3
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.0e-162 577.4 441 65.3
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 8.6e-162 574.3 448 65.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.4e-159 567.0 426 66.2
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.7e-158 561.6 399 70.2
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.1e-156 557.4 452 64.6
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 9.2e-156 554.3 445 63.4
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 1.2e-155 553.9 429 65.0
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 2.3e-154 549.7 438 62.6
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 3.0e-154 549.3 415 66.0
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 3.0e-154 549.3 430 65.3
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 8.6e-154 547.7 453 62.5
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 2.5e-153 546.2 467 61.2
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 3.3e-153 545.8 458 61.6
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.2e-152 543.9 409 66.3
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 1.6e-152 543.5 444 64.0
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 3.6e-152 542.3 424 63.7
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.0e-151 540.8 428 63.6
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 6.8e-151 538.1 446 63.0
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 6.8e-151 538.1 446 63.0
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 8.9e-151 537.7 456 63.4
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.5e-150 537.0 434 62.7
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 3.4e-150 535.8 473 60.3
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 4.4e-150 535.4 468 59.2
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 5.8e-150 535.0 431 62.6
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 9.8e-150 534.3 433 63.5
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 9.8e-150 534.3 484 58.3
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 2.2e-149 533.1 444 62.8
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 6.4e-149 531.6 452 61.1
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 8.3e-149 531.2 450 62.4
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.4e-148 529.6 396 66.2
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.4e-148 529.6 429 61.3
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 7.0e-148 528.1 410 63.2
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.2e-147 527.3 415 63.6
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.2e-147 527.3 415 63.6
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.7e-147 526.2 445 62.5
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 3.5e-147 525.8 450 60.0
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.7e-146 523.5 404 66.6
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 5.0e-146 521.9 435 62.5
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 8.6e-146 521.2 403 67.2
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 5.6e-145 518.5 444 59.7
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 5.6e-145 518.5 424 61.8
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 9.5e-145 517.7 441 59.9
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 1.2e-144 517.3 441 59.6
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.6e-144 516.9 467 58.2
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 2.1e-144 516.5 438 60.3
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 2.8e-144 516.2 449 60.1
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 3.6e-144 515.8 480 57.3
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 6.2e-144 515.0 441 59.6
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 6.2e-144 515.0 440 60.7
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 6.2e-144 515.0 452 58.6
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 8.1e-144 514.6 459 60.3
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.1e-143 514.2 433 59.4
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.4e-143 513.8 444 59.2
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 2.3e-143 513.1 464 56.9
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.5e-142 510.4 476 56.9
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.4e-142 509.2 449 58.8
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 3.4e-142 509.2 443 60.3
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.4e-142 508.8 445 58.4
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 4.4e-142 508.8 463 58.5
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 9.8e-142 507.7 445 58.4
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 9.8e-142 507.7 384 63.3
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 3.7e-141 505.8 485 56.7
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.1e-140 504.2 407 60.9
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 4.1e-140 502.3 421 62.2
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.6e-139 500.4 443 58.0
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 1.6e-139 500.4 535 52.1
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.7e-139 499.6 448 57.8
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.3e-138 496.5 415 60.7
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.9e-137 493.4 449 57.7
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 6.2e-136 488.4 447 57.9
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.4e-135 487.3 428 60.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 6.8e-135 485.0 393 63.1
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 8.9e-135 484.6 415 59.0
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 5.8e-134 481.9 473 55.6
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 1.0e-130 471.1 395 60.5
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.8e-127 460.3 363 65.3
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.5e-126 457.2 423 55.8
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 2.2e-125 453.4 457 52.7
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 3.8e-125 452.6 414 56.5
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 1.4e-124 450.7 431 55.7
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 3.3e-121 439.5 455 52.1
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 5.3e-119 432.2 355 60.8
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 6.0e-115 418.7 424 52.8
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.3e-112 411.0 439 51.0
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 4.9e-109 399.1 509 45.6
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 4.6e-107 392.5 516 46.9
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.8e-106 390.6 320 63.8
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 3.8e-101 372.9 512 42.6
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 8.4e-101 371.7 313 62.3
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.1e-99 367.1 309 59.9
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 7.2e-84 315.5 294 55.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.2e-75 288.1 411 43.1
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 5.3e-71 272.7 262 55.3
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 7.0e-71 272.3 246 57.7
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 7.2e-68 262.3 489 37.4
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.7e-59 233.8 515 32.4
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 3.1e-55 220.3 184 58.7
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.9e-53 213.8 126 79.4
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.9e-53 213.8 126 79.4
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 3.3e-44 183.7 127 68.5
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.3e-42 177.6 292 37.0
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 7.8e-38 162.5 112 70.5
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.7e-32 143.7 138 56.5
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 8.9e-26 122.5 190 40.5
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-23 113.6 68 72.1
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.0e-21 109.0 136 47.8
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 1.5e-20 105.1 114 49.1
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 9.5e-20 102.4 120 49.2
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-11 72.8 128 32.8


User provided reference genes

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