Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g010620.1 Solanum lycopersicum HOM05D003261 ORTHO05D014021 3.8e-77 291.6 164 100.0
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 9.2e-31 137.5 237 44.7
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 9.2e-31 137.5 237 44.7
SHI00252 Sapria himalayana HOM05D003769 ORTHO05D014021 4.0e-26 122.1 93 64.5
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 3.2e-23 112.5 239 42.3
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.8e-18 96.7 228 31.1
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 2.6e-17 92.8 200 33.0
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 2.2e-16 89.7 208 41.8
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 8.4e-16 87.8 276 30.4
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 1.9e-15 86.7 53 71.7
RcHm_v2.0_Chr4g0429811 Rosa chinensis HOM05D003261 ORTHO05D014021 3.5e-14 82.4 54 66.7
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 7.8e-14 81.3 201 38.3
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 2.3e-13 79.7 162 32.1
Nitab4.5_0002089g0060 Nicotiana tabacum HOM05D003261 ORTHO05D014021 3.0e-13 79.3 46 73.9
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 8.7e-13 77.8 182 34.1
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 1.5e-12 77.0 45 73.3
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 2.8e-11 72.8 46 69.6
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.8e-11 72.8 155 32.3
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 4.7e-11 72.0 153 31.4
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 9.0e-10 67.8 90 57.8
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 3.4e-09 65.9 156 31.4
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 3.4e-09 65.9 43 72.1
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 4.4e-09 65.5 43 69.8
TPR.G39909 Trifolium pratense HOM05D003261 ORTHO05D004230 4.4e-09 65.5 43 69.8
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 5.8e-09 65.1 43 69.8
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 5.8e-09 65.1 43 69.8
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 7.6e-09 64.7 43 69.8
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 7.6e-09 64.7 43 69.8
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 7.6e-09 64.7 43 69.8
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 7.6e-09 64.7 43 69.8
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 7.6e-09 64.7 133 33.8
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 9.9e-09 64.3 43 69.8
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.9e-09 64.3 43 69.8
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 9.9e-09 64.3 43 67.4
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 9.9e-09 64.3 43 67.4
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 69.8
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 1.3e-08 63.9 42 69.0
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 69.8
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 69.8
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.3e-08 63.9 43 67.4
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 67.4
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 67.4
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 67.4
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 65.1
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 65.1
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 65.1
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 1.7e-08 63.5 43 67.4
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 65.1
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 2.2e-08 63.2 195 25.1
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 67.4
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 67.4
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 67.4
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 67.4
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 2.2e-08 63.2 43 67.4
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 67.4
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 2.9e-08 62.8 136 33.1
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 67.4
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 67.4
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 2.9e-08 62.8 43 65.1
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 65.1
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 3.8e-08 62.4 42 66.7
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 62.8
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 3.8e-08 62.4 43 62.8
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 65.1
Nitab4.5_0003111g0080 Nicotiana tabacum HOM05D003261 ORTHO05D004230 3.8e-08 62.4 53 60.4
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 69.8
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 65.1
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 3.8e-08 62.4 43 65.1
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 62.8
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 65.1
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 62.8
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 62.8
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 65.1
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 4.9e-08 62.0 43 65.1
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 6.4e-08 61.6 42 64.3
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 60.5
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 62.8
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 6.4e-08 61.6 42 64.3
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 6.4e-08 61.6 43 65.1
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 8.4e-08 61.2 43 62.8
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 8.4e-08 61.2 43 62.8
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 8.4e-08 61.2 42 64.3
HanXRQChr05g0140631 Helianthus annuus HOM05D003261 ORTHO05D014021 1.1e-07 60.8 86 40.7
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 1.4e-07 60.5 43 67.4
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 1.4e-07 60.5 43 62.8
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.4e-07 60.5 43 60.5
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 1.4e-07 60.5 43 60.5
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.9e-07 60.1 43 62.8
CiPaw.14G132800 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.9e-07 60.1 43 62.8
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.9e-07 60.1 43 58.1
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 1.9e-07 60.1 43 62.8
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.9e-07 60.1 43 65.1
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 2.4e-07 59.7 42 59.5
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 2.4e-07 59.7 43 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 3.2e-07 59.3 42 61.9
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.2e-07 59.3 43 62.8
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 3.2e-07 59.3 43 60.5
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 3.2e-07 59.3 42 61.9
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 4.2e-07 58.9 42 64.3
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-07 58.9 42 64.3
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 4.2e-07 58.9 43 62.8
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 5.4e-07 58.5 157 28.7
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 5.4e-07 58.5 42 61.9
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 5.4e-07 58.5 42 57.1
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 5.4e-07 58.5 43 62.8
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 5.4e-07 58.5 42 59.5
Peaxi162Scf00858g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 7.1e-07 58.2 42 64.3
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 9.3e-07 57.8 42 61.9
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 9.3e-07 57.8 43 62.8
CiPaw.06G074500 Carya illinoinensis HOM05D003261 ORTHO05D004230 9.3e-07 57.8 43 60.5
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 9.3e-07 57.8 42 59.5
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 1.2e-06 57.4 43 60.5
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-06 57.4 41 58.5
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 1.2e-06 57.4 43 60.5
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.2e-06 57.4 43 60.5
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.6e-06 57.0 43 60.5
Sopen09g005330 Solanum pennellii HOM05D003261 ORTHO05D014021 1.6e-06 57.0 155 32.3
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.6e-06 57.0 34 64.7
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.1e-06 56.6 41 63.4
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 2.1e-06 56.6 43 60.5
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 2.7e-06 56.2 43 60.5
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.7e-06 56.2 34 67.6
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 58.1
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 3.5e-06 55.8 43 60.5
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 3.5e-06 55.8 41 63.4
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 4.6e-06 55.5 43 58.1
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 4.6e-06 55.5 43 58.1
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 4.6e-06 55.5 41 61.0
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 4.6e-06 55.5 43 58.1
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 4.6e-06 55.5 43 58.1
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 4.6e-06 55.5 43 58.1
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 6.0e-06 55.1 41 58.5
Ca_04167_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 6.0e-06 55.1 77 39.0


User provided reference genes

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