Gene: COL.COLO4_10588

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_10588
  • Transcript Identifier COL.rna9383
  • Gene Type Coding gene
  • Location AWUE01014541.1 : 31169-37127 : negative

Gene Family Information

  • ID HOM05D004885
  • #Genes/#Species 151/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna9383
  • GenBank OMP03189.1
  • id gene10560
  • gene_name COLO4_10588
  • uniprot A0A1R3K7Z8

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050790
IEA
GOA Databaseregulation of catalytic activity
GO:0007264
IEA
GOA Databasesmall GTPase mediated signal transduction
GO:0007264
IEA
InterProsmall GTPase mediated signal transduction
GO:0018344
ISO
PLAZA Homology (enrichment)protein geranylgeranylation HOM05D004885
GO:0006886
ISO
PLAZA Homology (enrichment)intracellular protein transport HOM05D004885
GO:2000541
ISO
PLAZA Integrative Orthologypositive regulation of protein geranylgeranylation AT3G06540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005092
IEA
GOA DatabaseGDP-dissociation inhibitor activity
GO:0005092
IEA
InterProGDP-dissociation inhibitor activity
GO:0005515
IEA
InterProprotein binding
GO:0031267
ISO
PLAZA Integrative Orthologysmall GTPase binding AT3G06540

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G06540
GO:0005968
ISO
PLAZA Integrative OrthologyRab-protein geranylgeranyltransferase complex AT3G06540
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G06540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR018203 GDP dissociation inhibitor
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
Mapman id Description
16.2.5.1.3 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component PRL1/MAC2
22.3.4.4.1.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.accessory subunit