Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 7.3e-33 143.3 71 100.0
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 7.3e-33 143.3 71 100.0
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 7.3e-33 143.3 71 100.0
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 2.1e-32 141.7 71 98.6
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 9.8e-30 132.9 71 88.7
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 9.8e-30 132.9 71 88.7
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 1.3e-29 132.5 70 88.6
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 1.1e-28 129.4 70 84.3
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.4e-28 127.1 69 87.0
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.4e-28 127.1 69 87.0
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 7.0e-28 126.7 71 83.1
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 5.0e-26 120.6 71 78.9
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 8.6e-26 119.8 71 78.9
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 1.1e-25 119.4 71 83.1
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 4.3e-25 117.5 71 77.5
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 5.6e-25 117.1 63 90.5
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 76.1
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 76.1
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 76.1
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 78.9
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 7.3e-25 116.7 71 77.5
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.6e-24 115.5 70 74.3
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 1.6e-24 115.5 71 77.5
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 2.1e-24 115.2 71 76.1
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.1e-24 115.2 71 74.6
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 2.8e-24 114.8 71 76.1
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 2.8e-24 114.8 69 76.8
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 2.8e-24 114.8 71 76.1
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 3.6e-24 114.4 71 73.2
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 3.6e-24 114.4 69 76.8
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 4.7e-24 114.0 69 78.3
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 4.7e-24 114.0 71 74.6
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 8.0e-24 113.2 71 76.1
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 8.0e-24 113.2 71 76.1
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 71.8
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 77.5
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 1.8e-23 112.1 69 73.9
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 71.8
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 76.1
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 2.3e-23 111.7 69 73.9
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 2.3e-23 111.7 71 73.2
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 3.1e-23 111.3 71 73.2
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 4.0e-23 110.9 69 76.8
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 69.0
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 69.0
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 73.2
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 73.2
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 70.4
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 70.4
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 74.6
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 74.6
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 8.9e-23 109.8 62 85.5
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 8.9e-23 109.8 71 73.2
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.2e-22 109.4 71 76.1
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 1.2e-22 109.4 69 71.0
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.2e-22 109.4 59 88.1
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 1.2e-22 109.4 71 74.6
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.2e-22 109.4 71 69.0
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.5e-22 109.0 69 73.9
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.5e-22 109.0 63 79.4
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.5e-22 109.0 71 69.0
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.0e-22 108.6 71 67.6
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 3.4e-22 107.8 71 69.0
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 5.8e-22 107.1 71 66.2
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 1.7e-21 105.5 71 70.4
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.2e-21 105.1 71 66.2
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 2.2e-21 105.1 69 66.7
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.2e-21 105.1 71 71.8
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 2.9e-21 104.8 69 69.6
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 2.9e-21 104.8 69 69.6
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 8.3e-21 103.2 71 66.2
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 1.1e-20 102.8 71 66.2
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 68.1
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.4e-20 102.4 71 67.6
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 1.4e-20 102.4 69 66.7
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.9e-20 102.1 59 81.4
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.4e-20 101.7 61 82.0
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.4e-20 101.7 69 66.7
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 3.2e-20 101.3 71 71.8
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 3.2e-20 101.3 71 66.2
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 9.2e-20 99.8 63 79.4
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 4.6e-19 97.4 69 62.3
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 6.0e-19 97.1 71 69.0
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 6.0e-19 97.1 71 69.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.0e-18 96.3 66 66.7
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 3.0e-18 94.7 71 64.8
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 6.6e-18 93.6 59 78.0
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.1e-17 92.8 69 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 1.5e-17 92.4 69 56.5
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 7.3e-17 90.1 59 74.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 9.5e-17 89.7 71 60.6
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 9.5e-17 89.7 57 71.9
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 9.5e-17 89.7 56 76.8
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 1.2e-16 89.4 71 57.7
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 1.6e-16 89.0 59 69.5
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.6e-16 89.0 59 69.5
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 2.1e-16 88.6 69 63.8
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 3.6e-16 87.8 64 64.1
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 4.7e-16 87.4 68 60.3
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 8.1e-16 86.7 64 62.5
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 1.1e-15 86.3 68 48.5
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 1.8e-15 85.5 60 71.7
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 5.2e-15 84.0 60 65.0
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 6.8e-15 83.6 70 58.6
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 8.9e-15 83.2 57 61.4
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.5e-14 82.4 70 57.1
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 3.4e-14 81.3 73 54.8
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 5.8e-14 80.5 72 54.2
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 7.5e-14 80.1 74 55.4
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 3.2e-12 74.7 54 63.0
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.7e-11 71.6 61 57.4
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 3.9e-10 67.8 49 69.4
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 1.5e-09 65.9 54 59.3
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 4.3e-09 64.3 83 44.6
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 7.3e-09 63.5 40 70.0


User provided reference genes

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