Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g028920.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-100 367.9 180 100.0
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-62 243.8 306 49.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-62 243.8 306 49.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-62 243.8 306 49.0
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-62 243.8 306 49.0
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-62 243.8 306 49.0
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 5.7e-58 228.0 306 46.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 4.1e-48 195.3 285 43.2
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.3e-46 190.3 306 39.5
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-45 187.2 242 47.9
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 5.5e-45 184.9 303 39.3
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 7.2e-45 184.5 296 39.9
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 5.7e-42 174.9 307 38.4
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 7.5e-42 174.5 277 39.7
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 9.7e-42 174.1 310 36.8
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 4.8e-41 171.8 306 38.6
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 4.8e-41 171.8 270 42.2
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.8e-40 169.9 303 36.6
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.6e-39 166.8 306 37.3
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 4.5e-39 165.2 304 35.5
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-38 163.3 302 37.4
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-38 163.3 302 37.4
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.7e-38 163.3 302 37.4
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 2.2e-38 162.9 304 35.2
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 3.8e-38 162.2 302 35.4
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 5.0e-38 161.8 302 35.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 7.2e-37 157.9 303 36.6
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 3.6e-36 155.6 304 35.2
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 4.4e-34 148.7 295 35.9
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 7.5e-34 147.9 293 34.1
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-32 141.7 255 40.0
Hund04024 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.0e-32 141.4 198 45.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 9.1e-32 141.0 267 35.2
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 9.1e-32 141.0 267 35.2
Hund31462 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-31 139.8 243 39.9
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 1.7e-30 136.7 309 33.3
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-30 136.7 272 37.1
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-30 136.7 272 37.1
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.9e-30 136.0 240 38.8
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.0e-30 135.2 271 37.6
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 277 35.7
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-29 134.0 278 36.0
Medtr3g450720 Medicago truncatula HOM05D000216 ORTHO05D000634 1.5e-26 123.6 170 41.8
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.6e-26 122.9 74 75.7
GSVIVG01034287001 Vitis vinifera HOM05D000216 ORTHO05D000634 7.5e-26 121.3 74 74.3
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.8e-26 120.9 259 37.1
Hund07969 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.7e-25 119.0 229 38.0
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.4e-24 117.1 74 70.3
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 1.8e-24 116.7 74 68.9
Gorai.008G142400 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.1e-24 115.5 71 71.8
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 7.0e-24 114.8 250 37.2
Gohir.D12G131101 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.0e-23 113.2 71 70.4
Gohir.A09G101340 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.7e-23 112.8 71 69.0
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 5.9e-23 111.7 151 45.0
Potri.019G027580 Populus trichocarpa HOM05D000216 ORTHO05D000634 5.9e-23 111.7 74 68.9
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 8.6e-22 107.8 74 71.6
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 9.5e-21 104.4 74 64.9
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-20 104.0 74 64.9
Lj2C1237G1 Lonicera japonica HOM05D000216 ORTHO05D000634 4.7e-20 102.1 182 37.9
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 4.7e-20 102.1 182 37.9
MSTRG.17791 Avicennia marina HOM05D000216 ORTHO05D000634 2.3e-19 99.8 150 41.3
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 2.3e-19 99.8 125 46.4
HanXRQChr14g0455011 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-19 99.4 74 62.2
ClCG07G007330 Citrullus lanatus HOM05D000216 ORTHO05D000634 4.0e-19 99.0 218 33.9
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-18 97.1 74 63.5
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.5e-18 97.1 64 70.3
Phvul.003G256666 Phaseolus vulgaris HOM05D000216 ORTHO05D000634 5.7e-18 95.1 75 60.0
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.5e-18 94.7 74 62.2
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.3e-17 94.0 61 72.1
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.3e-17 94.0 61 72.1
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.7e-17 93.6 65 63.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 2.2e-17 93.2 65 63.1
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-17 92.8 55 81.8
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 5.4e-16 88.6 65 67.7
HanXRQChr00c0313g0573471 Helianthus annuus HOM05D000216 ORTHO05D000634 5.4e-16 88.6 65 67.7
Solyc01g017510.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.7e-15 86.3 56 69.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 4.6e-15 85.5 59 62.7
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 5.9e-15 85.1 112 43.8
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 1.0e-14 84.3 148 35.8
Hund10655 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.0e-14 82.0 53 69.8
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.5e-13 79.7 56 66.1
BraSC140t45608Z Brassica rapa HOM05D000216 ORTHO05D000634 7.3e-13 78.2 64 59.4
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.4e-11 73.9 172 35.5
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.8e-11 73.6 85 47.1
Migut.J01368 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.8e-11 73.6 50 70.0
Nitab4.5_0003361g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.6e-10 69.7 34 91.2
Zm00001eb226410 Zea mays HOM05D000216 ORTHO05D000634 4.4e-10 68.9 83 45.8
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 4.4e-10 68.9 83 45.8
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 5.8e-10 68.6 214 27.6
Zm00001eb434960 Zea mays HOM05D000216 ORTHO05D000634 9.8e-10 67.8 83 44.6
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 9.8e-10 67.8 83 44.6
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 9.8e-10 67.8 83 44.6
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 9.8e-10 67.8 83 44.6
Nitab4.5_0011099g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.2e-09 66.6 36 80.6
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.9e-09 65.5 76 47.4
Nitab4.5_0000502g0040 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.9e-09 65.5 52 63.5
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.9e-09 65.5 115 39.1
Migut.D01415 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.3e-09 64.7 37 78.4
Zm00001eb271610 Zea mays HOM05D000216 ORTHO05D000634 8.3e-09 64.7 115 39.1
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.2e-08 61.2 106 37.7
arahy.Tifrunner.gnm1.ann1.RVT61B Arachis hypogaea HOM05D000216 ORTHO05D000634 2.7e-07 59.7 80 47.5
Lalb_Chr06g0173011 Lupinus albus HOM05D000216 ORTHO05D000634 2.7e-07 59.7 44 63.6
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.3e-06 56.6 76 43.4
HanXRQChr14g0455001 Helianthus annuus HOM05D000216 ORTHO05D000634 3.9e-06 55.8 37 70.3
TPR.G1481 Trifolium pratense HOM05D000216 ORTHO05D000634 6.6e-06 55.1 33 66.7
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.6e-06 54.7 31 74.2


User provided reference genes

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