Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g014390.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.1e-35 151.8 74 100.0
DCAR_010534 Daucus carota HOM05D000216 ORTHO05D000634 3.5e-22 107.8 58 91.4
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 3.5e-22 107.8 58 91.4
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BolC7t41733H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BraSC140t45586Z Brassica rapa HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 4.6e-22 107.5 54 96.3
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 1.3e-21 105.9 58 89.7
Hma1.2p1_0094F.1_g047102 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.7e-21 105.5 54 94.4
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 2.3e-21 105.1 54 94.4
COL.COLO4_37398 Corchorus olitorius HOM05D000216 ORTHO05D000634 3.0e-21 104.8 54 92.6
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 3.0e-21 104.8 54 92.6
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 3.0e-21 104.8 54 92.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 3.0e-21 104.8 54 92.6
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 1.1e-20 102.8 58 87.9
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 1.9e-20 102.1 54 90.7
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.9e-20 102.1 54 90.7
Gorai.005G167800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.5e-20 101.7 54 88.9
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 2.5e-20 101.7 52 92.3
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 3.3e-20 101.3 58 86.2
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 5.6e-20 100.5 58 82.8
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 5.6e-20 100.5 54 87.0
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 5.6e-20 100.5 54 87.0
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 5.6e-20 100.5 54 87.0
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 5.6e-20 100.5 56 87.5
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 5.6e-20 100.5 56 87.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.3e-19 99.4 56 87.5
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.3e-19 99.4 56 87.5
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 2.1e-19 98.6 58 82.8
Psat0s1150g0080 Pisum sativum HOM05D000216 ORTHO05D000634 3.6e-19 97.8 54 83.3
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 3.6e-19 97.8 54 83.3
ATR0187G002 Amborella trichopoda HOM05D000216 ORTHO05D000634 4.8e-19 97.4 53 88.7
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-18 94.7 56 83.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-18 94.7 56 83.9
EL10Ac9g21014 Beta vulgaris HOM05D000216 ORTHO05D000634 5.8e-17 90.5 56 80.4
FAN07G2613 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.7e-16 89.0 54 83.3
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 1.7e-16 89.0 58 72.4
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 1.7e-16 89.0 58 72.4
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.8e-16 87.8 58 70.7
HanXRQChr00c0994g0578181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.8e-16 87.8 58 70.7
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.8e-16 87.8 58 70.7
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.8e-16 87.8 58 70.7
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 3.8e-16 87.8 58 70.7
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.8e-16 87.8 58 70.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 9.3e-15 83.2 44 90.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.6e-14 82.4 58 75.9
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 2.7e-14 81.6 43 93.0
SGA_v2.0_scaffold119G32686 Striga asiatica HOM05D000216 ORTHO05D001131 2.7e-14 81.6 57 75.4
Medtr7g111800 Medicago truncatula HOM05D000216 ORTHO05D000634 3.5e-14 81.3 48 83.3
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 5.1e-13 77.4 44 84.1
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 5.6e-12 73.9 42 83.3
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 5.6e-12 73.9 42 83.3
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.1e-11 70.1 35 97.1
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.1e-11 70.1 35 97.1
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.1e-11 70.1 35 97.1
C02p28760 Brassica napus HOM05D000216 ORTHO05D000634 1.8e-10 68.9 33 93.9
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 5.3e-10 67.4 58 60.3
Hund21335 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.8e-09 63.9 56 62.5
ClCG00G001580 Citrullus lanatus HOM05D000216 ORTHO05D000634 7.6e-09 63.5 36 83.3
Lalb_Chr07g0192481 Lupinus albus HOM05D000216 ORTHO05D000634 1.7e-08 62.4 44 72.7
Solyc12g062567.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-07 58.2 37 78.4


User provided reference genes

Program Settings