Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.6e-125 450.7 220 100.0
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-96 356.3 198 89.4
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 9.3e-79 297.4 175 84.0
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.7e-75 285.4 167 84.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-62 243.0 141 85.1
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.9e-61 238.8 133 87.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.0e-60 236.5 156 75.0
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 2.0e-60 236.5 156 75.0
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 4.4e-60 235.3 156 74.4
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.4e-60 235.3 159 73.6
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.7e-60 235.0 158 72.2
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 7.4e-60 234.6 180 67.2
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 7.4e-60 234.6 158 72.2
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 7.4e-60 234.6 156 74.4
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-59 233.8 156 73.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.3e-59 233.8 156 74.4
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.3e-59 233.8 156 73.7
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.7e-59 233.4 159 73.0
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.7e-59 233.4 159 73.6
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-59 232.6 158 71.5
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-59 232.6 158 71.5
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.8e-59 232.6 158 71.5
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 2.8e-59 232.6 157 73.9
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.8e-59 232.6 157 73.9
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 2.8e-59 232.6 158 72.2
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.8e-59 232.6 158 72.2
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 3.7e-59 232.3 158 73.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 4.8e-59 231.9 158 70.9
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.8e-59 231.9 163 69.3
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 6.3e-59 231.5 159 73.0
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 6.3e-59 231.5 159 73.0
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 6.3e-59 231.5 156 73.1
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 6.3e-59 231.5 156 73.1
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 8.2e-59 231.1 158 70.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 8.2e-59 231.1 158 71.5
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.1e-58 230.7 158 71.5
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.1e-58 230.7 163 69.3
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.4e-58 230.3 158 71.5
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.4e-58 230.3 158 71.5
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.4e-58 230.3 158 70.9
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.4e-58 230.3 169 66.9
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.8e-58 229.9 158 70.9
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.8e-58 229.9 163 69.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.8e-58 229.9 163 69.3
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.4e-58 229.6 158 70.9
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.4e-58 229.6 159 71.1
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.4e-58 229.6 156 72.4
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.4e-58 229.6 159 72.3
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 3.1e-58 229.2 158 70.9
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.1e-58 229.2 158 72.2
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 4.1e-58 228.8 158 70.9
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 5.3e-58 228.4 159 70.4
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 5.3e-58 228.4 159 70.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.3e-58 228.4 158 70.9
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 5.3e-58 228.4 159 71.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 5.3e-58 228.4 157 72.0
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 5.3e-58 228.4 163 68.7
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 6.9e-58 228.0 159 70.4
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 9.1e-58 227.6 158 70.3
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-57 227.3 159 69.8
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.2e-57 227.3 153 75.2
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.2e-57 227.3 166 68.7
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.5e-57 226.9 158 69.6
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.5e-57 226.9 166 68.7
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.5e-57 226.9 157 72.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.0e-57 226.5 158 70.3
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.0e-57 226.5 159 70.4
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.6e-57 226.1 164 69.5
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.6e-57 226.1 158 69.6
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 2.6e-57 226.1 158 69.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 4.5e-57 225.3 165 67.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 4.5e-57 225.3 158 69.6
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.9e-57 224.9 158 70.3
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 7.7e-57 224.6 158 72.8
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 7.7e-57 224.6 158 70.3
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.0e-56 224.2 159 70.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 1.3e-56 223.8 158 72.2
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.7e-56 223.4 158 72.2
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.7e-56 223.4 158 72.2
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.7e-56 223.4 158 72.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 2.2e-56 223.0 158 72.2
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-56 223.0 158 72.2
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.2e-56 223.0 158 72.2
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.2e-56 223.0 158 72.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 2.2e-56 223.0 159 69.8
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.2e-56 223.0 159 69.8
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.9e-56 222.6 158 72.2
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.8e-56 222.2 158 72.2
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 3.8e-56 222.2 156 68.6
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.8e-56 222.2 165 67.3
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 6.5e-56 221.5 158 71.5
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 8.5e-56 221.1 158 71.5
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.1e-55 220.7 155 69.7
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-55 220.7 158 71.5
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.1e-55 220.7 158 70.9
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.9e-55 219.9 158 70.9
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.5e-55 219.5 155 69.0
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.5e-55 219.5 155 69.0
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 4.2e-55 218.8 158 69.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 5.5e-55 218.4 158 69.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 5.5e-55 218.4 167 64.7
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 5.5e-55 218.4 155 68.4
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.2e-54 217.2 158 68.4
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.1e-54 216.5 164 64.0
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.4e-53 213.8 159 67.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.2e-53 211.8 164 65.2
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.6e-52 209.5 156 66.7
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.6e-52 209.5 156 66.7
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 4.4e-52 208.8 159 66.0
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 7.4e-52 208.0 159 66.0
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.7e-52 207.6 173 61.8
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.3e-51 207.2 156 64.7
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 3.1e-50 202.6 179 57.5
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.9e-49 198.4 167 64.1
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.5e-47 193.7 164 59.8
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.2e-46 190.7 185 58.4
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.1e-46 189.9 175 58.9
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.8e-45 186.8 115 76.5
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.7e-44 181.0 118 72.9
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.7e-41 172.9 154 59.7
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 5.5e-39 165.2 81 96.3
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 8.3e-35 151.4 92 78.3
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 7.7e-33 144.8 89 76.4
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 2.0e-28 130.2 148 45.9
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 4.9e-27 125.6 181 42.5
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.1e-26 124.4 74 79.7
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 5.4e-26 122.1 146 47.3
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.2e-17 94.4 106 50.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 5.9e-17 92.0 75 60.0
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.0e-16 89.7 66 66.7
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 4.3e-15 85.9 66 63.6
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 9.5e-15 84.7 56 75.0
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.2e-14 84.3 95 49.5
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.6e-14 82.8 64 62.5
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.7e-14 82.4 66 62.1
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.2e-14 82.0 56 66.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 6.2e-14 82.0 72 56.9
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.8e-13 80.5 55 65.5
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-13 80.5 56 64.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.8e-13 78.6 55 63.6
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.8e-12 75.5 75 50.7
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.7e-11 72.8 109 43.1


User provided reference genes

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