Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.0e-126 454.5 241 100.0
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.1e-120 436.8 228 96.5
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 4.0e-115 418.3 228 92.1
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.1e-88 330.5 225 76.0
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.1e-87 326.2 236 72.0
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.8e-83 313.2 227 71.8
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 7.1e-48 194.9 214 49.5
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 6.0e-47 191.8 228 45.2
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.8e-46 190.3 214 47.2
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.3e-44 184.1 204 45.1
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 1.4e-43 180.6 219 46.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.5e-42 177.2 198 49.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.6e-42 176.4 220 45.0
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.5e-42 175.6 221 44.8
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 3.8e-41 172.6 220 45.5
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.2e-40 169.5 201 45.3
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 2.1e-39 166.8 206 41.3
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 3.6e-39 166.0 218 41.7
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 4.6e-39 165.6 202 47.5
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 4.6e-39 165.6 215 43.3
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.5e-37 160.6 204 41.7
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.3e-37 159.5 207 44.0
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 7.4e-37 158.3 145 51.0
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 9.7e-37 157.9 210 41.9
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 9.7e-37 157.9 200 44.5
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 2.2e-36 156.8 196 44.4
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.8e-36 156.4 212 42.0
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 3.7e-36 156.0 212 41.0
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 8.2e-36 154.8 209 42.6
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 4.1e-35 152.5 219 40.2
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 4.1e-35 152.5 221 39.8
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 6.9e-35 151.8 216 40.3
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 4.5e-34 149.1 196 42.9
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.0e-33 147.9 221 40.3
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.3e-33 147.5 239 39.3
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 2.2e-33 146.7 219 39.7
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 3.8e-33 146.0 207 40.6
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 3.8e-33 146.0 210 38.1
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 5.0e-33 145.6 233 34.8
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 6.5e-33 145.2 206 41.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.9e-32 143.7 210 38.6
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 2.5e-32 143.3 229 37.1
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 7.2e-32 141.7 202 38.6
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 7.2e-32 141.7 207 40.6
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.2e-31 141.0 220 37.7
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-31 141.0 202 38.6
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.1e-31 140.2 202 38.6
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 2.1e-31 140.2 175 42.9
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 2.7e-31 139.8 201 40.8
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 4.6e-31 139.0 239 37.2
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 6.1e-31 138.7 198 38.9
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.0e-30 137.9 200 39.5
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.4e-30 137.5 207 39.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 2.3e-30 136.7 232 35.8
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 6.7e-30 135.2 212 39.2
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 6.7e-30 135.2 212 35.4
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 6.7e-30 135.2 202 36.1
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 8.8e-30 134.8 214 37.4
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.1e-29 134.4 184 41.8
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.1e-29 134.4 194 43.3
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 2.0e-29 133.7 205 37.6
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 2.6e-29 133.3 201 35.8
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 2.6e-29 133.3 222 38.3
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.6e-29 133.3 202 42.1
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.3e-29 132.9 149 45.0
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 4.4e-29 132.5 232 35.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 5.7e-29 132.1 209 37.8
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 5.7e-29 132.1 148 46.6
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 9.7e-29 131.3 198 38.9
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.3e-28 131.0 207 38.6
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.8e-28 129.8 149 44.3
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 4.8e-28 129.0 157 42.0
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 8.2e-28 128.3 200 37.5
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.4e-27 126.7 147 43.5
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 2.4e-27 126.7 215 34.0
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.4e-27 126.7 206 37.9
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 3.1e-27 126.3 148 45.9
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 6.9e-27 125.2 263 32.7
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 9.1e-27 124.8 200 38.0
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 4.5e-26 122.5 203 37.9
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.3e-25 120.9 216 36.1
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.2e-25 120.2 209 36.8
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.9e-25 119.8 154 40.3
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 5.0e-25 119.0 204 37.7
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 6.5e-25 118.6 147 42.9
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 6.5e-25 118.6 147 42.9
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.9e-24 117.1 209 35.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 2.5e-24 116.7 148 43.2
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 3.2e-24 116.3 149 41.6
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 3.2e-24 116.3 147 43.5
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 4.2e-24 115.9 147 42.2
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 5.5e-24 115.5 147 42.9
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 7.2e-24 115.2 224 34.4
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 7.2e-24 115.2 207 34.3
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.9e-22 109.4 203 32.5
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 3.9e-22 109.4 155 36.8
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.2e-22 109.0 212 32.1
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.2e-22 109.0 212 32.1
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 6.7e-22 108.6 146 38.4
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 9.7e-21 104.8 200 33.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 2.4e-19 100.1 153 41.2
PGSC0003DMG400009839 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.9e-16 90.5 55 81.8
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 3.6e-15 86.3 46 93.5
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 1.3e-12 77.8 117 35.9
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.8e-12 76.6 76 42.1
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 3.7e-12 76.3 228 26.3
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.4e-11 73.6 254 28.3
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.7e-09 67.4 73 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 5.0e-09 65.9 97 38.1
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 9.4e-08 61.6 114 36.0


User provided reference genes

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