Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.7e-230 802.4 420 100.0
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 4.5e-183 644.8 341 99.1
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.3e-174 615.9 441 75.3
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 9.5e-173 610.5 341 93.5
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.2e-167 593.6 438 73.3
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.1e-165 587.0 422 77.5
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 2.8e-164 582.4 430 76.7
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 8.1e-164 580.9 441 71.2
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 5.8e-162 574.7 441 71.7
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 1.1e-160 570.5 430 71.2
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.6e-159 566.6 432 69.9
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 6.0e-159 564.7 441 69.8
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 7.8e-159 564.3 431 69.8
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.3e-158 563.5 440 69.5
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 2.5e-157 559.3 440 69.5
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 5.6e-157 558.1 439 69.5
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 9.5e-157 557.4 439 69.9
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.6e-156 556.6 439 69.9
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 1.6e-156 556.6 431 71.0
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 4.7e-156 555.1 441 69.4
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.2e-156 554.7 439 69.5
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.4e-155 553.5 403 72.7
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.4e-155 553.5 537 60.9
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.8e-155 553.1 430 69.8
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 2.6e-154 549.3 430 69.1
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 5.8e-154 548.1 446 68.6
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 7.6e-154 547.7 434 70.7
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 2.2e-153 546.2 437 68.2
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.9e-153 545.8 557 58.5
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 3.8e-153 545.4 437 69.3
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 4.1e-152 542.0 451 67.4
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.6e-151 540.0 437 67.7
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 2.1e-151 539.7 431 69.1
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 7.8e-151 537.7 438 68.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.7e-150 536.6 441 68.3
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 3.0e-150 535.8 438 68.0
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 8.6e-150 534.3 440 67.5
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 2.5e-149 532.7 440 68.2
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 2.5e-149 532.7 442 67.0
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 4.3e-149 531.9 440 66.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.6e-148 530.0 446 67.0
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.8e-148 529.3 436 66.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 8.1e-148 527.7 441 67.1
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 3.1e-147 525.8 428 68.2
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 3.1e-147 525.8 442 66.1
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 4.0e-147 525.4 439 65.1
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 2.6e-146 522.7 437 67.0
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 3.4e-146 522.3 433 68.4
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 3.8e-145 518.8 439 66.7
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 7.1e-144 514.6 448 65.0
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 2.1e-143 513.1 439 65.8
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.7e-143 512.7 524 58.8
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 2.7e-143 512.7 422 66.8
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.0e-142 510.8 431 66.8
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.0e-142 510.8 430 64.7
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.9e-141 506.5 362 73.5
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.6e-140 503.4 527 57.9
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.6e-140 503.4 426 65.7
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 3.6e-140 502.3 426 64.6
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.4e-139 499.6 429 64.6
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 3.4e-138 495.7 448 63.6
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 3.8e-137 492.3 432 64.6
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 5.6e-133 478.4 431 62.6
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.7e-132 475.7 439 62.6
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 4.8e-132 475.3 429 64.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.1e-131 472.6 361 70.4
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 9.0e-131 471.1 428 62.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 5.8e-130 468.4 428 62.6
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 8.4e-129 464.5 427 62.3
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 4.2e-128 462.2 363 70.5
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 1.2e-127 460.7 449 59.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 2.1e-127 459.9 438 60.7
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 4.6e-127 458.8 353 70.8
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.8e-126 456.8 442 59.5
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.0e-126 456.1 443 59.6
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.1e-125 454.1 445 59.1
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.5e-122 443.7 370 65.4
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 7.6e-122 441.4 354 69.2
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.5e-121 438.3 364 69.8
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 6.5e-121 438.3 352 68.5
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 3.2e-120 436.0 460 58.0
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.7e-119 433.0 430 59.8
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 2.7e-119 433.0 444 58.8
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 3.9e-118 429.1 360 65.6
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 6.7e-118 428.3 423 59.1
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 1.5e-117 427.2 349 69.1
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.2e-116 423.3 326 71.8
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.2e-116 423.3 364 65.4
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 6.3e-116 421.8 408 56.9
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.4e-115 420.6 438 55.7
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.4e-115 419.9 420 57.6
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 5.9e-114 415.2 404 58.9
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 2.5e-112 409.8 438 56.8
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 9.3e-112 407.9 427 57.4
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.2e-111 407.5 437 56.1
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 6.1e-111 405.2 357 64.7
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 3.0e-110 402.9 359 65.2
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 5.7e-109 398.7 324 67.6
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 2.1e-103 380.2 388 57.7
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 7.7e-98 361.7 351 59.3
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.9e-96 357.1 346 59.2
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 5.5e-96 355.5 339 60.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 8.0e-95 351.7 394 51.0
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.6e-90 337.4 420 48.3
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 8.0e-87 325.1 421 49.4
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 3.0e-86 323.2 441 45.1
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 5.2e-86 322.4 357 55.5
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 7.5e-85 318.5 324 54.9
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.7e-76 290.8 321 55.5
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 3.7e-68 263.1 222 64.9
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.2e-63 248.1 218 64.7
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.7e-63 246.1 304 53.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 5.2e-54 216.1 233 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.3e-49 201.4 320 41.9
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 4.7e-47 193.0 297 38.7
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 6.4e-36 156.0 214 45.8
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 2.4e-35 154.1 77 100.0
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 2.4e-35 154.1 77 100.0
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.2e-31 141.7 329 36.5
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 1.4e-30 138.3 75 89.3
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.9e-30 136.0 77 87.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.2e-29 135.2 75 90.7
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.7e-28 131.3 77 87.0
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.4e-27 127.5 75 84.0
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 5.4e-27 126.3 75 84.0
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 3.5e-26 123.6 77 79.2
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.3e-25 121.7 77 76.6
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 3.0e-25 120.6 82 72.0
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.3e-24 117.1 70 81.4
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 9.6e-24 115.5 77 75.3
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 8.1e-23 112.5 75 72.0
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 4.2e-19 100.1 98 62.2
PGSC0003DMG402028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.6e-18 96.7 54 96.3
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.8e-14 84.7 41 97.6
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 3.5e-10 70.5 91 50.5
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.1e-08 65.5 51 66.7
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 7.4e-08 62.8 104 44.2


User provided reference genes

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