Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1901.7 955 100.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1883.6 955 98.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1841.6 955 97.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1809.7 955 94.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1793.5 955 94.3
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1775.4 955 93.2
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1722.6 953 91.5
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1611.7 964 82.4
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1590.9 956 82.5
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 958 82.0
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1570.1 958 81.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 956 81.6
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 958 80.9
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 951 81.3
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 963 80.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 964 80.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 958 80.3
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 958 80.4
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1555.4 961 80.5
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1554.3 939 81.5
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 962 80.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 956 80.5
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 963 80.3
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 965 78.9
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 949 79.9
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 956 80.0
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 952 80.1
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 949 79.8
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 960 79.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 961 79.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 958 79.9
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 962 79.2
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 962 79.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 958 80.1
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1541.2 946 79.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 943 80.1
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 959 78.9
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 949 79.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 953 78.8
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 942 80.0
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 960 79.2
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 937 80.4
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 948 79.0
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1526.5 958 79.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 949 80.0
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 958 78.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 961 77.9
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 956 78.6
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 957 78.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 958 79.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 963 78.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 952 78.9
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 963 78.5
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 942 79.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 962 78.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 958 77.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 972 77.3
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 973 76.7
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 972 77.4
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 972 76.4
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 968 77.3
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 970 78.7
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 954 78.4
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 971 77.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1494.2 964 77.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 968 77.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 971 76.5
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 968 76.9
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1491.5 953 77.3
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 941 77.7
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1490.7 957 77.4
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 965 77.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 970 76.0
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1486.5 961 77.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 1002 74.7
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 941 76.9
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 941 76.9
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 944 76.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 971 75.4
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 954 76.6
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 941 77.0
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 941 76.6
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 941 76.6
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 953 77.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 944 76.7
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 941 76.6
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 941 76.3
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 942 76.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 942 76.2
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 962 74.6
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 962 74.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 958 76.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1459.5 960 75.9
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 939 76.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1456.0 952 76.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1456.0 944 76.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 976 74.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1446.8 954 74.8
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1434.9 969 75.4
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1425.6 951 74.6
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1422.1 951 75.1
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1406.7 947 71.9
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1401.0 956 71.1
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1365.1 951 72.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1354.3 832 80.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1344.3 950 72.0
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1310.8 848 76.5
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1310.4 959 68.4
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1307.7 853 76.2
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1191.4 733 79.7
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1185.2 997 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1171.8 963 61.0
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 964 63.5
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1129.8 707 79.1
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1117.4 1020 55.7
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1082.8 665 80.6
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1081.2 938 59.5
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.7e-310 1069.3 647 81.6
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.3e-274 948.7 711 66.1
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.6e-220 769.2 769 51.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.6e-212 742.7 463 78.4
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.8e-180 636.7 441 71.7
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.3e-128 463.4 303 70.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 4.0e-110 403.7 1305 25.1
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.5e-109 401.7 653 39.7
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 6.7e-81 306.6 202 72.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.7e-68 265.4 207 69.1
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.2e-58 232.6 180 67.8
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 6.3e-55 220.3 300 44.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 5.9e-53 213.8 134 82.8
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.3e-49 201.8 125 79.2
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.4e-38 165.2 139 61.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.1e-34 152.1 201 40.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.0e-28 133.3 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.4e-14 86.3 80 60.0
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 2.4e-06 58.9 94 42.6
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 3.2e-06 58.5 45 66.7


User provided reference genes

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