Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g050950.2 Solanum lycopersicum HOM05D001546 ORTHO05D008648 2.1e-59 232.3 124 100.0
Sopen05g029430 Solanum pennellii HOM05D001546 ORTHO05D008648 7.9e-59 230.3 123 99.2
PGSC0003DMG400007020 Solanum tuberosum HOM05D001546 ORTHO05D008648 2.5e-57 225.3 123 95.9
Nitab4.5_0003912g0060 Nicotiana tabacum HOM05D001546 ORTHO05D008648 8.4e-53 210.3 123 88.6
Nitab4.5_0001329g0130 Nicotiana tabacum HOM05D001546 ORTHO05D008648 7.2e-44 180.6 176 61.9
Oeu005800.1 Olea europaea HOM05D001546 ORTHO05D008648 9.7e-41 170.2 124 74.2
Atru.chr5.288 Acer truncatum HOM05D001546 ORTHO05D008648 6.3e-40 167.5 123 71.5
TWI14G0061 Tripterygium wilfordii HOM05D001546 ORTHO05D008648 6.3e-40 167.5 123 72.4
Migut.B01619 Erythranthe guttata HOM05D001546 ORTHO05D008648 1.1e-39 166.8 124 73.4
MSTRG.20739 Avicennia marina HOM05D001546 ORTHO05D008648 1.4e-39 166.4 124 73.4
Cpa.g.sc18.103 Carica papaya HOM05D001546 ORTHO05D008648 1.8e-39 166.0 123 67.5
Gohir.D08G156500 Gossypium hirsutum HOM05D001546 ORTHO05D008648 4.1e-39 164.9 123 69.9
Gohir.A08G135700 Gossypium hirsutum HOM05D001546 ORTHO05D008648 1.5e-38 162.9 123 69.1
SalBow5G5288 Salvia bowleyana HOM05D001546 ORTHO05D008648 1.5e-38 162.9 124 71.8
CsaV3_3G009800 Cucumis sativus L. HOM05D001546 ORTHO05D008648 3.4e-38 161.8 123 65.0
RcHm_v2.0_Chr1g0349891 Rosa chinensis HOM05D001546 ORTHO05D008648 3.4e-38 161.8 123 67.5
GSVIVG01027665001 Vitis vinifera HOM05D001546 ORTHO05D008648 4.5e-38 161.4 123 69.1
MELO3C006201.2 Cucumis melo HOM05D001546 ORTHO05D008648 7.7e-38 160.6 123 65.0
Cc02_g24070 Coffea canephora HOM05D001546 ORTHO05D008648 1.0e-37 160.2 124 72.6
AL4G44380 Arabidopsis lyrata HOM05D001546 ORTHO05D008648 1.3e-37 159.8 123 64.2
BcaB02g08944 Brassica carinata HOM05D001546 ORTHO05D002908 1.3e-37 159.8 124 65.3
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 1.3e-37 159.8 121 66.9
Carub.0004s2788 Capsella rubella HOM05D001546 ORTHO05D008648 2.2e-37 159.1 123 62.6
Peaxi162Scf00959g00125 Petunia axillaris HOM05D001546 ORTHO05D008648 2.2e-37 159.1 88 90.9
RcHm_v2.0_Chr1g0349941 Rosa chinensis HOM05D001546 ORTHO05D008648 2.2e-37 159.1 123 65.9
SGA_v2.0_scaffold95G28909 Striga asiatica HOM05D001546 ORTHO05D008648 2.9e-37 158.7 124 68.5
CiPaw.01G263600 Carya illinoinensis HOM05D001546 ORTHO05D008648 6.5e-37 157.5 123 66.7
FvH4_7g11500 Fragaria vesca HOM05D001546 ORTHO05D008648 6.5e-37 157.5 123 67.5
Duzib138G0139 Durio zibethinus HOM05D001546 ORTHO05D002908 8.5e-37 157.1 125 68.0
Prupe.2G143400 Prunus persica HOM05D001546 ORTHO05D008648 1.1e-36 156.8 123 66.7
Rhsim07G0028900 Rhododendron simsii HOM05D001546 ORTHO05D008648 1.9e-36 156.0 123 65.0
CARHR140490 Cardamine hirsuta HOM05D001546 ORTHO05D008648 2.5e-36 155.6 123 61.8
FAN06G1243 Fragaria x ananassa HOM05D001546 ORTHO05D002908 3.2e-36 155.2 123 66.7
FAN06G5055 Fragaria x ananassa HOM05D001546 ORTHO05D002908 3.2e-36 155.2 123 66.7
FAN10G0988 Fragaria x ananassa HOM05D001546 ORTHO05D002908 3.2e-36 155.2 123 66.7
ClCG05G002360 Citrullus lanatus HOM05D001546 ORTHO05D008648 4.2e-36 154.8 123 62.6
MD07G1119400 Malus domestica HOM05D001546 ORTHO05D008648 4.2e-36 154.8 123 66.7
Thhalv10001529m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 5.5e-36 154.5 122 63.1
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 7.2e-36 154.1 126 64.3
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 7.2e-36 154.1 126 64.3
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 1.2e-35 153.3 133 61.7
ECA236G2516 Erigeron canadensis HOM05D001546 ORTHO05D008648 1.6e-35 152.9 123 65.9
FAN10G0703 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.6e-35 152.9 123 65.9
vmacro13415 Vaccinium macrocarpon HOM05D001546 ORTHO05D008648 2.1e-35 152.5 123 65.9
Actinidia12247 Actinidia chinensis HOM05D001546 ORTHO05D008648 2.7e-35 152.1 123 67.5
PSO782G0784 Papaver somniferum HOM05D001546 ORTHO05D008648 2.7e-35 152.1 123 63.4
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 2.7e-35 152.1 123 60.2
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 2.7e-35 152.1 123 60.2
Sed0028009 Sechium edule HOM05D001546 ORTHO05D008648 2.7e-35 152.1 123 64.2
THA.LOC104817238 Tarenaya hassleriana HOM05D001546 ORTHO05D008648 3.6e-35 151.8 124 62.9
CSS0003206 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 1.0e-34 150.2 123 65.0
CSS0048837 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 1.0e-34 150.2 123 65.0
PSO832G0911 Papaver somniferum HOM05D001546 ORTHO05D008648 1.8e-34 149.4 123 63.4
Thecc.01G378800 Theobroma cacao HOM05D001546 ORTHO05D008648 1.8e-34 149.4 125 64.8
AT2G45280 Arabidopsis thaliana HOM05D001546 ORTHO05D008648 2.3e-34 149.1 123 61.8
Thhalv10001556m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 3.0e-34 148.7 135 58.5
Gorai.004G162800 Gossypium raimondii HOM05D001546 ORTHO05D008648 3.0e-34 148.7 154 55.8
Ciclev10021754m.g Citrus clementina HOM05D001546 ORTHO05D008648 3.9e-34 148.3 124 65.3
HanXRQChr16g0532481 Helianthus annuus HOM05D001546 ORTHO05D008648 3.9e-34 148.3 123 65.0
Eucgr.I00435 Eucalyptus grandis HOM05D001546 ORTHO05D008648 1.5e-33 146.4 123 64.2
Lalb_Chr07g0189931 Lupinus albus HOM05D001546 ORTHO05D008648 2.0e-33 146.0 125 61.6
Lsat_1_v5_gn_7_9580 Lactuca sativa HOM05D001546 ORTHO05D008648 2.6e-33 145.6 123 65.9
Nn1g01135 Nelumbo nucifera HOM05D001546 ORTHO05D008648 2.6e-33 145.6 123 63.4
TPR.G31325 Trifolium pratense HOM05D001546 ORTHO05D008648 3.3e-33 145.2 124 57.3
VMungo0331G1707 Vigna mungo HOM05D001546 ORTHO05D008648 5.7e-33 144.4 124 58.1
Aqoxy7G00663 Aquilegia oxysepala HOM05D001546 ORTHO05D008648 9.7e-33 143.7 126 59.5
Medtr4g024850 Medicago truncatula HOM05D001546 ORTHO05D008648 9.7e-33 143.7 124 56.5
PGR042G0240 Punica granatum HOM05D001546 ORTHO05D008648 9.7e-33 143.7 123 63.4
FAN03G2056 Fragaria x ananassa HOM05D001546 ORTHO05D008648 1.3e-32 143.3 127 63.0
Ca_19947_v3 Cicer arietinum L. HOM05D001546 ORTHO05D008648 1.7e-32 142.9 124 58.1
DCAR_031520 Daucus carota HOM05D001546 ORTHO05D008648 1.7e-32 142.9 123 61.8
Medtr4g111780 Medicago truncatula HOM05D001546 ORTHO05D008648 2.2e-32 142.5 124 55.6
arahy.Tifrunner.gnm1.ann1.Y484AZ Arachis hypogaea HOM05D001546 ORTHO05D008648 3.7e-32 141.7 125 60.0
Sc23g0003690 Simmondsia chinensis HOM05D001546 ORTHO05D008648 3.7e-32 141.7 123 61.0
EL10Ac1g00872 Beta vulgaris HOM05D001546 ORTHO05D008648 6.3e-32 141.0 123 61.8
Psat7g230880 Pisum sativum HOM05D001546 ORTHO05D008648 1.4e-31 139.8 124 54.8
arahy.Tifrunner.gnm1.ann1.KRWE0T Arachis hypogaea HOM05D001546 ORTHO05D008648 3.1e-31 138.7 126 58.7
arahy.Tifrunner.gnm1.ann1.ZAG0TB Arachis hypogaea HOM05D001546 ORTHO05D008648 4.1e-31 138.3 125 58.4
Phvul.010G082100 Phaseolus vulgaris HOM05D001546 ORTHO05D008648 5.3e-31 137.9 124 56.5
AUR62004193 Chenopodium quinoa HOM05D001546 ORTHO05D008648 7.0e-31 137.5 123 61.0
Aa31LG1G26810 Aethionema arabicum HOM05D001546 ORTHO05D008648 9.1e-31 137.1 144 55.6
CANSAT56G2954 Cannabis sativa HOM05D001546 ORTHO05D008648 9.1e-31 137.1 129 61.2
CANSAT56G4308 Cannabis sativa HOM05D001546 ORTHO05D008648 9.1e-31 137.1 129 61.2
Lj3g0018034 Lotus japonicus HOM05D001546 ORTHO05D008648 1.2e-30 136.7 125 56.8
AUR62013651 Chenopodium quinoa HOM05D001546 ORTHO05D002908 1.0e-29 133.7 123 60.2
Dinv43692 Davidia involucrata HOM05D001546 ORTHO05D008648 1.0e-29 133.7 123 65.0
QL08p052789 Quercus lobata HOM05D001546 ORTHO05D008648 1.7e-29 132.9 162 49.4
C04p48920 Brassica napus HOM05D001546 ORTHO05D008648 2.5e-28 129.0 101 66.3
Hund17030 Selenicereus undatus HOM05D001546 ORTHO05D008648 7.2e-28 127.5 123 62.6
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 7.2e-28 127.5 112 66.1
HPP92_018406 Vanilla planifolia HOM05D001546 ORTHO05D008648 9.4e-28 127.1 123 55.3
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 1.2e-27 126.7 123 56.1
SEGI_35236 Sequoiadendron giganteum HOM05D001546 ORTHO05D008648 1.6e-27 126.3 124 52.4
Os01g0578000 Oryza sativa ssp. japonica HOM05D001546 ORTHO05D008648 5.2e-26 121.3 125 51.2
MD02G1207000 Malus domestica HOM05D001546 ORTHO05D008648 1.5e-25 119.8 122 56.6
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 2.0e-25 119.4 90 71.1
Lj7A531T53 Lonicera japonica HOM05D001546 ORTHO05D008648 3.3e-25 118.6 86 67.4
Manes.11G109100 Manihot esculenta HOM05D001546 ORTHO05D008648 4.8e-24 114.8 87 64.4
Ah.05g176670 Amaranthus hybridus HOM05D001546 ORTHO05D008648 1.7e-21 106.3 178 41.6
CDE04G0759 Ceratophyllum demersum HOM05D001546 ORTHO05D008648 1.7e-21 106.3 123 48.0
Glyma.03G027600 Glycine max HOM05D001546 ORTHO05D008648 1.1e-20 103.6 123 48.0
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 1.1e-20 103.6 124 49.2
CAN.G295.12 Capsicum annuum HOM05D001546 ORTHO05D008648 5.5e-20 101.3 52 92.3
MBI12_g20322_MAGBIO Magnolia biondii HOM05D001546 ORTHO05D008648 2.0e-17 92.8 74 62.2
CBR_g29371 Chara braunii HOM05D001546 ORTHO05D008648 4.4e-17 91.7 123 41.5
Potri.014G068100 Populus trichocarpa HOM05D001546 ORTHO05D008648 6.3e-16 87.8 52 76.9
arahy.Tifrunner.gnm1.ann1.6GCE7S Arachis hypogaea HOM05D001546 ORTHO05D008648 1.1e-15 87.0 59 71.2
Duzib133G1401 Durio zibethinus HOM05D001546 ORTHO05D008648 4.5e-14 81.6 53 71.7
Pp3c5_12400 Physcomitrium patens HOM05D001546 ORTHO05D008648 3.2e-12 75.5 122 36.1
TAR375G1132 Trochodendron aralioides HOM05D001546 ORTHO05D008648 1.2e-11 73.6 74 56.8
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 4.7e-11 71.6 154 31.2
MCO01G368 Micromonas commoda HOM05D001363 ORTHO05D008648 1.4e-10 70.1 122 36.9
Cre02.g102500 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D008648 4.0e-10 68.6 124 35.5
AagrBONN_evm.TU.Sc2ySwM_228.594 Anthoceros agrestis HOM05D001546 ORTHO05D008648 2.0e-09 66.2 67 50.7
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 2.0e-09 66.2 84 48.8
BcaB02g10315 Brassica carinata HOM05D001546 ORTHO05D008648 3.4e-09 65.5 72 52.8


User provided reference genes

Program Settings