Gene: Sopen05g029430

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g029430
  • Transcript Identifier Sopen05g029430.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 73054992-73059533 : positive

Gene Family Information

  • ID HOM05D001546
  • #Genes/#Species 413/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g029430.1

Descriptions

  • Description Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. | RAS associated with diabetes protein 51C (RAD51C) | CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain , DNA recombination and repair protein, RecA-like , DNA recombination and repair protein Rad51, C-terminal | BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein ., Meiotic recombination protein DMC1 homolog - Glycine max (Soybean)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT2G45280
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT2G45280
GO:0007143
ISO
PLAZA Integrative Orthologyfemale meiotic nuclear division AT2G45280
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division AT2G45280
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT2G45280
GO:0045003
ISO
PLAZA Integrative Orthologydouble-strand break repair via synthesis-dependent strand annealing AT2G45280
GO:0016444
ISO
PLAZA Integrative Orthologysomatic cell DNA recombination AT2G45280

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G45280
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D001546
GO:0004802
ISO
PLAZA Homology (enrichment)transketolase activity HOM05D001546

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033925 Rad51/DMC1/RadA
IPR016467 DNA recombination and repair protein, RecA-like
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR013632 DNA recombination and repair protein Rad51-like, C-terminal
Mapman id Description
13.3.5.4.3.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RAD51c-XRCC3 accessory DSB repair heterodimer.component RAD51C