Gene: FAN06G1243
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN06G1243
- Transcript Identifier FAN06G1243.1
- Gene Type Coding gene
- Location Fvb7-2 : 16189317-16197650 : positive
Gene Family Information
- ID HOM05D001546
- #Genes/#Species 413/99
- Phylogenetic origin
- ID ORTHO05D002908
- #Genes/#Species 255/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb7-2-snap-gene-162.33.v1.0.a1
- pacid 50491227
Descriptions
- Description 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT2G45290 |
| GO:0016444 | ISO | PLAZA Integrative Orthology | somatic cell DNA recombination | AT2G45280 |
| GO:0051321 | ISO | PLAZA Integrative Orthology | meiotic cell cycle | AT2G45280 |
| GO:0045003 | ISO | PLAZA Integrative Orthology | double-strand break repair via synthesis-dependent strand annealing | AT2G45280 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | AT2G45280 |
| GO:0007140 | ISO | PLAZA Integrative Orthology | male meiotic nuclear division | AT2G45280 |
| GO:0007143 | ISO | PLAZA Integrative Orthology | female meiotic nuclear division | AT2G45280 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT2G45280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050897 | ISO | PLAZA Integrative Orthology | cobalt ion binding | Zm00001eb378030 |
| GO:0030145 | ISO | PLAZA Integrative Orthology | manganese ion binding | Zm00001eb378030 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G60750 |
| GO:0005509 | ISO | PLAZA Integrative Orthology | calcium ion binding | Zm00001eb378030 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G45280 |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004802 | IEA | InterPro | transketolase activity | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G45290 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT2G45290 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT3G60750 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT2G45290 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009014 | Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR005474 | Transketolase, N-terminal |
| IPR033247 | Transketolase family |
| IPR033925 | Rad51/DMC1/RadA |
| IPR013632 | DNA recombination and repair protein Rad51-like, C-terminal |
| IPR033248 | Transketolase, C-terminal domain |
| IPR029061 | Thiamin diphosphate-binding fold |
| IPR005475 | Transketolase-like, pyrimidine-binding domain |
| IPR005478 | Transketolase, bacterial-like |
| Mapman id | Description |
|---|---|
| 1.2.7 | Photosynthesis.calvin cycle.transketolase |
| 13.3.5.4.3.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RAD51c-XRCC3 accessory DSB repair heterodimer.component RAD51C |
| 3.9.2.3 | Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase |